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HEPACAM2 HEPACAM family member 2 [ Bos taurus (domestic cattle) ]

Gene ID: 513430, updated on 12-Oct-2024

Summary

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Official Symbol
HEPACAM2provided by VGNC
Official Full Name
HEPACAM family member 2provided by VGNC
Primary source
VGNC:VGNC:29811
See related
BGD:BT20808; Ensembl:ENSBTAG00000012456
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See HEPACAM2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (10540867..10600689, complement)

Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene sterile alpha motif domain containing 9 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like Neighboring gene VPS50 subunit of EARP/GARPII complex Neighboring gene calcitonin receptor Neighboring gene microRNA mir-653

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC159765

General protein information

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Preferred Names
HEPACAM family member 2
Names
mitotic kinetics regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101974.1 → NP_001095444.1  HEPACAM family member 2 precursor

    See identical proteins and their annotated locations for NP_001095444.1

    Status: PROVISIONAL

    Source sequence(s)
    BC149765
    UniProtKB/Swiss-Prot
    A6QQC6
    UniProtKB/TrEMBL
    A0AAF6YXV0
    Conserved Domains (3) summary
    smart00408
    Location:155 → 214
    IGc2; Immunoglobulin C-2 Type
    pfam07679
    Location:137 → 220
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:25 → 130
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    10540867..10600689 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024990633.2 → XP_024846401.1  HEPACAM family member 2 isoform X7

    Conserved Domains (1) summary
    pfam13927
    Location:73 → 148
    Ig_3; Immunoglobulin domain

  2. XM_015468103.3 → XP_015323589.1  HEPACAM family member 2 isoform X7

    Conserved Domains (1) summary
    pfam13927
    Location:73 → 148
    Ig_3; Immunoglobulin domain

  3. XM_059885542.1 → XP_059741525.1  HEPACAM family member 2 isoform X4

  4. XM_024990630.2 → XP_024846398.2  HEPACAM family member 2 isoform X1

    Related
    ENSBTAP00000016529.5, ENSBTAT00000016529.6

  5. XM_005205140.5 → XP_005205197.1  HEPACAM family member 2 isoform X3

    UniProtKB/TrEMBL
    A0AAF6YXV0
    Conserved Domains (3) summary
    smart00408
    Location:167 → 226
    IGc2; Immunoglobulin C-2 Type
    pfam07679
    Location:149 → 232
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:37 → 142
    Ig; Immunoglobulin domain

  6. XM_005205139.5 → XP_005205196.1  HEPACAM family member 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LGE3, A0AAF6YXV0
    Related
    ENSBTAP00000057487.2, ENSBTAT00000078463.2
    Conserved Domains (3) summary
    smart00408
    Location:168 → 227
    IGc2; Immunoglobulin C-2 Type
    pfam07679
    Location:150 → 233
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:38 → 143
    Ig; Immunoglobulin domain

  7. XM_059885543.1 → XP_059741526.1  HEPACAM family member 2 isoform X5

  8. XM_005205142.5 → XP_005205199.1  HEPACAM family member 2 isoform X6

    UniProtKB/TrEMBL
    A0AAF6YXV0
    Conserved Domains (3) summary
    smart00408
    Location:167 → 226
    IGc2; Immunoglobulin C-2 Type
    pfam07679
    Location:149 → 232
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:37 → 142
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6QQC6.1 GenPept UniProtKB/Swiss-Prot:A6QQC6

Gene LinkOut

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