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CHST12 carbohydrate sulfotransferase 12 [ Bos taurus (domestic cattle) ]

Gene ID: 513030, updated on 4-Oct-2024

Summary

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Official Symbol
CHST12provided by VGNC
Official Full Name
carbohydrate sulfotransferase 12provided by VGNC
Primary source
VGNC:VGNC:27340
See related
BGD:BT15830; Ensembl:ENSBTAG00000020898
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See CHST12 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (40822330..40841803, complement)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-12029 Neighboring gene galectin-related inter-fiber protein Neighboring gene kinesin-like protein KIF19 Neighboring gene kinesin-like protein KIF3C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 12
Names
carbohydrate (chondroitin 4) sulfotransferase 12
chondroitin 4-O-sulfotransferase 2
NP_001071381.1
XP_005225145.2
XP_005225146.2
XP_024840576.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077913.2 → NP_001071381.1  carbohydrate sulfotransferase 12

    See identical proteins and their annotated locations for NP_001071381.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123592
    UniProtKB/TrEMBL
    F6RFX1, Q08DS2
    Related
    ENSBTAP00000064512.2, ENSBTAT00000073469.2
    Conserved Domains (1) summary
    pfam03567
    Location:162 → 407
    Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    40822330..40841803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005225089.5 → XP_005225146.2  carbohydrate sulfotransferase 12 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1M362, A0AAF6DM19
    Related
    ENSBTAP00000027841.6, ENSBTAT00000027841.6
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family

  2. XM_005225088.5 → XP_005225145.2  carbohydrate sulfotransferase 12 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1M362, A0AAF6DM19
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family

  3. XM_024984808.2 → XP_024840576.1  carbohydrate sulfotransferase 12 isoform X1

    UniProtKB/TrEMBL
    A0AAA9SB62
    Related
    ENSBTAP00000083334.1, ENSBTAT00000118532.1
    Conserved Domains (1) summary
    pfam03567
    Location:197 → 442
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

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