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ZNF391 zinc finger protein 391 [ Bos taurus (domestic cattle) ]

Gene ID: 513014, updated on 4-Oct-2024

Summary

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Official Symbol
ZNF391provided by VGNC
Official Full Name
zinc finger protein 391provided by VGNC
Primary source
VGNC:VGNC:37265
See related
BGD:BT21765; Ensembl:ENSBTAG00000009152
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human all
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Genomic context

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See ZNF391 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (31197406..31208409, complement)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene zinc finger protein 184 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene transfer RNA methionine (anticodon CAU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 391

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100352.1 → NP_001093822.1  zinc finger protein 391

    See identical proteins and their annotated locations for NP_001093822.1

    Status: PROVISIONAL

    Source sequence(s)
    BC149512
    UniProtKB/TrEMBL
    A6QPV7
    Conserved Domains (2) summary
    COG5048
    Location:147 → 351
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    31197406..31208409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005223722.5 → XP_005223779.1  zinc finger protein 391 isoform X1

    See identical proteins and their annotated locations for XP_005223779.1

    UniProtKB/TrEMBL
    A6QPV7
    Conserved Domains (2) summary
    COG5048
    Location:147 → 351
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_010818430.4 → XP_010816732.1  zinc finger protein 391 isoform X1

    See identical proteins and their annotated locations for XP_010816732.1

    UniProtKB/TrEMBL
    A6QPV7
    Related
    ENSBTAP00000053032.2, ENSBTAT00000052672.4
    Conserved Domains (2) summary
    COG5048
    Location:147 → 351
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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