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LOC512905 apolipoprotein L, 3 [ Bos taurus (domestic cattle) ]

Gene ID: 512905, updated on 10-Oct-2024

Summary

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Gene symbol
LOC512905
Gene description
apolipoprotein L, 3
See related
BGD:BT27140; Ensembl:ENSBTAG00000000667
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
APOL3
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Genomic context

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See LOC512905 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (74669784..74714595)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein L3 Neighboring gene zeta-crystallin-like Neighboring gene apolipoprotein L2 Neighboring gene myosin heavy chain 9 Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene serine palmitoyltransferase small subunit A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrative analysis of APOL3 gene CNV for adult cattle stature. Peng SJ, et al. Anim Biotechnol, 2020 Oct. PMID 31104559

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Integrative analysis of APOL3 gene CNV for adult cattle stature.
    Title: Integrative analysis of APOL3 gene CNV for adult cattle stature.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein L3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100351.1 → NP_001093821.1  apolipoprotein L3

    See identical proteins and their annotated locations for NP_001093821.1

    Status: PROVISIONAL

    Source sequence(s)
    BC149445
    UniProtKB/TrEMBL
    A0AAA9THB2, A6QPR4
    Related
    ENSBTAP00000000878.5, ENSBTAT00000000878.6
    Conserved Domains (1) summary
    pfam05461
    Location:40 → 338
    ApoL; Apolipoprotein L

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    74669784..74714595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059886323.1 → XP_059742306.1  apolipoprotein L3 isoform X1

    UniProtKB/TrEMBL
    A6QPR4

  2. XM_005206819.5 → XP_005206876.1  apolipoprotein L3 isoform X1

    See identical proteins and their annotated locations for XP_005206876.1

    UniProtKB/TrEMBL
    A0AAA9THB2, A6QPR4
    Conserved Domains (1) summary
    pfam05461
    Location:40 → 338
    ApoL; Apolipoprotein L

  3. XM_059886324.1 → XP_059742307.1  apolipoprotein L3 isoform X1

    UniProtKB/TrEMBL
    A6QPR4

  4. XM_010805335.4 → XP_010803637.1  apolipoprotein L3 isoform X1

    See identical proteins and their annotated locations for XP_010803637.1

    UniProtKB/TrEMBL
    A0AAA9THB2, A6QPR4
    Conserved Domains (1) summary
    pfam05461
    Location:40 → 338
    ApoL; Apolipoprotein L

  5. XM_005206823.5 → XP_005206880.1  apolipoprotein L3 isoform X1

    See identical proteins and their annotated locations for XP_005206880.1

    UniProtKB/TrEMBL
    A0AAA9THB2, A6QPR4
    Conserved Domains (1) summary
    pfam05461
    Location:40 → 338
    ApoL; Apolipoprotein L

  6. XM_005206824.5 → XP_005206881.1  apolipoprotein L3 isoform X1

    See identical proteins and their annotated locations for XP_005206881.1

    UniProtKB/TrEMBL
    A0AAA9THB2, A6QPR4
    Conserved Domains (1) summary
    pfam05461
    Location:40 → 338
    ApoL; Apolipoprotein L
Nucleotide Protein Strain
Heading Accession and Version

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