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ZC3H12C zinc finger CCCH-type containing 12C [ Bos taurus (domestic cattle) ]

Gene ID: 512586, updated on 17-Aug-2024

Summary

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Official Symbol
ZC3H12Cprovided by VGNC
Official Full Name
zinc finger CCCH-type containing 12Cprovided by VGNC
Primary source
VGNC:VGNC:37099
See related
Ensembl:ENSBTAG00000008732
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (20168554..20245446)

Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene mitochondrial inner membrane protease subunit 1-like Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene radixin Neighboring gene large ribosomal subunit protein eL39-like Neighboring gene dnaJ homolog subfamily A member 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    20168554..20245446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059875079.1 → XP_059731062.1  probable ribonuclease ZC3H12C isoform X2

    UniProtKB/TrEMBL
    A0AAA9TL41, A0AAA9TU25

  2. XM_059875081.1 → XP_059731064.1  probable ribonuclease ZC3H12C isoform X2

    UniProtKB/TrEMBL
    A0AAA9TL41, A0AAA9TU25

  3. XM_059875082.1 → XP_059731065.1  probable ribonuclease ZC3H12C isoform X2

    UniProtKB/TrEMBL
    A0AAA9TL41, A0AAA9TU25
    Related
    ENSBTAP00000100048.1, ENSBTAT00000088169.1

  4. XM_024975733.2 → XP_024831501.1  probable ribonuclease ZC3H12C isoform X2

    UniProtKB/TrEMBL
    A0AAA9TL41, A0AAA9TU25
    Related
    ENSBTAP00000097004.1, ENSBTAT00000105040.1
    Conserved Domains (2) summary
    pfam11977
    Location:213 → 368
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
    cl25932
    Location:500 → 710
    Peptidase_S21; Assemblin (Peptidase family S21)

  5. XM_059875080.1 → XP_059731063.1  probable ribonuclease ZC3H12C isoform X2

    UniProtKB/TrEMBL
    A0AAA9TL41, A0AAA9TU25

  6. XM_002692971.5 → XP_002693017.2  probable ribonuclease ZC3H12C isoform X1

    UniProtKB/TrEMBL
    A0AAA9S133, A0AAA9TL41
    Related
    ENSBTAP00000079580.1, ENSBTAT00000110294.1
    Conserved Domains (2) summary
    pfam11977
    Location:245 → 400
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
    cl25932
    Location:532 → 742
    Peptidase_S21; Assemblin (Peptidase family S21)
Nucleotide Protein Strain
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