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P3H2 prolyl 3-hydroxylase 2 [ Bos taurus (domestic cattle) ]

Gene ID: 511799, updated on 4-Oct-2024

Summary

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Official Symbol
P3H2provided by VGNC
Official Full Name
prolyl 3-hydroxylase 2provided by VGNC
Primary source
VGNC:VGNC:32533
See related
BGD:BT30341; Ensembl:ENSBTAG00000021025
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
LEPREL1
Orthologs
human mouse all
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Genomic context

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See P3H2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (77130195..77309576)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104970909 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene claudin 1 Neighboring gene uncharacterized LOC112447425 Neighboring gene uncharacterized LOC132345651 Neighboring gene uncharacterized LOC132345652 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene tumor protein p63 Neighboring gene abasic site processing protein HMCES-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2
Names
leprecan-like 1
NP_001093815.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100345.2 → NP_001093815.1  prolyl 3-hydroxylase 2 precursor

    See identical proteins and their annotated locations for NP_001093815.1

    Status: PROVISIONAL

    Source sequence(s)
    BC148129
    UniProtKB/TrEMBL
    A6QLY3
    Related
    ENSBTAP00000027999.4, ENSBTAT00000027999.6
    Conserved Domains (2) summary
    smart00702
    Location:470 → 668
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    cl21750
    Location:309 → 342
    Fis1; Mitochondrial Fission Protein Fis1, cytosolic domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    77130195..77309576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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