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ZNF12 zinc finger protein 12 [ Bos taurus (domestic cattle) ]

Gene ID: 511194, updated on 4-Oct-2024

Summary

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Official Symbol
ZNF12provided by VGNC
Official Full Name
zinc finger protein 12provided by VGNC
Primary source
VGNC:VGNC:49991
See related
BGD:BT18036; Ensembl:ENSBTAG00000039782
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ZNF325
Orthologs
human mouse all
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Genomic context

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See ZNF12 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (38480539..38516365, complement)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112444331 Neighboring gene zinc finger protein 316 Neighboring gene uncharacterized LOC100140207 Neighboring gene large ribosomal subunit protein uL11-like Neighboring gene speedy protein E4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An ordered comparative map of the cattle and human genomes. Band MR, et al. Genome Res, 2000 Sep. PMID 10984454, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC179420

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 12
Names
gonadotropin inducible transcription repressor-3
zinc finger protein 325

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110071.3 → NP_001103541.2  zinc finger protein 12

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    NKLS02000025
    UniProtKB/TrEMBL
    A0A3Q1LXY3
    Related
    ENSBTAP00000060431.1, ENSBTAT00000080316.2
    Conserved Domains (3) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:294 → 682
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. NM_001372135.1 → NP_001359064.1  zinc finger protein 12

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    NKLS02000025
    UniProtKB/TrEMBL
    A0A3Q1LXY3
    Conserved Domains (3) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:294 → 682
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    38480539..38516365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881249.1 → XP_059737232.1  zinc finger protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LXY3

  2. XM_059881254.1 → XP_059737237.1  zinc finger protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LXY3

  3. XM_059881253.1 → XP_059737236.1  zinc finger protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LXY3

  4. XM_059881252.1 → XP_059737235.1  zinc finger protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LXY3

  5. XM_059881255.1 → XP_059737238.1  zinc finger protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LXY3

  6. XM_059881251.1 → XP_059737234.1  zinc finger protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LXY3

  7. XM_059881250.1 → XP_059737233.1  zinc finger protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LXY3
Nucleotide Protein Strain
Heading Accession and Version

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