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HP1BP3 heterochromatin protein 1 binding protein 3 [ Bos taurus (domestic cattle) ]

Gene ID: 510194, updated on 4-Oct-2024

Summary

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Official Symbol
HP1BP3provided by VGNC
Official Full Name
heterochromatin protein 1 binding protein 3provided by VGNC
Primary source
VGNC:VGNC:29935
See related
BGD:BT20785; Ensembl:ENSBTAG00000018656
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See HP1BP3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (131855284..131894540)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene endothelin converting enzyme 1 Neighboring gene uncharacterized LOC132343459 Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene uncharacterized LOC112443421 Neighboring gene uncharacterized LOC132343568 Neighboring gene SH2 domain containing 5 Neighboring gene kinesin family member 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC142335

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterochromatin protein 1-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075436.1 → NP_001068904.1  heterochromatin protein 1-binding protein 3

    See identical proteins and their annotated locations for NP_001068904.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123556
    UniProtKB/Swiss-Prot
    Q08DU9
    UniProtKB/TrEMBL
    A0AAF7AG50
    Related
    ENSBTAP00000024825.4, ENSBTAT00000024825.5
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    131855284..131894540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025000581.2 → XP_024856349.1  heterochromatin protein 1-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0AAF7AG50
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  2. XM_005203100.4 → XP_005203157.1  heterochromatin protein 1-binding protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005203157.1

    UniProtKB/Swiss-Prot
    Q08DU9
    UniProtKB/TrEMBL
    A0AAF7AG50
    Related
    ENSBTAP00000068482.2, ENSBTAT00000076273.2
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  3. XM_010802534.3 → XP_010800836.1  heterochromatin protein 1-binding protein 3 isoform X2

    See identical proteins and their annotated locations for XP_010800836.1

    UniProtKB/TrEMBL
    A0AAF7AG50
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  4. XM_059892917.1 → XP_059748900.1  heterochromatin protein 1-binding protein 3 isoform X3

  5. XM_025000575.2 → XP_024856343.1  heterochromatin protein 1-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0AAF7AG50
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

  6. XM_059892898.1 → XP_059748881.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q08DU9
    UniProtKB/TrEMBL
    A0AAF7AG50

  7. XM_059892899.1 → XP_059748882.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q08DU9
    UniProtKB/TrEMBL
    A0AAF7AG50

  8. XM_025000566.2 → XP_024856334.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q08DU9
    UniProtKB/TrEMBL
    A0AAF7AG50
    Conserved Domains (3) summary
    smart00526
    Location:253 → 319
    H15; Domain in histone families 1 and 5
    cd00073
    Location:155 → 245
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:346 → 411
    Linker_histone; linker histone H1 and H5 family

  9. XM_059892916.1 → XP_059748899.1  heterochromatin protein 1-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0AAF7AG50

  10. XM_059892896.1 → XP_059748879.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q08DU9
    UniProtKB/TrEMBL
    A0AAF7AG50

  11. XM_005203102.4 → XP_005203159.1  heterochromatin protein 1-binding protein 3 isoform X2

    See identical proteins and their annotated locations for XP_005203159.1

    UniProtKB/TrEMBL
    A0AAF7AG50
    Conserved Domains (3) summary
    smart00526
    Location:215 → 281
    H15; Domain in histone families 1 and 5
    cd00073
    Location:117 → 207
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:308 → 373
    Linker_histone; linker histone H1 and H5 family

RNA

  1. XR_009496851.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08DU9.1 GenPept UniProtKB/Swiss-Prot:Q08DU9

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