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RAB7A RAB7A, member RAS oncogene family [ Bos taurus (domestic cattle) ]

Gene ID: 509970, updated on 12-Oct-2024

Summary

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Official Symbol
RAB7Aprovided by VGNC
Official Full Name
RAB7A, member RAS oncogene familyprovided by VGNC
Primary source
VGNC:VGNC:33660
See related
BGD:BT11257
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See RAB7A in Genome Data Viewer
Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (59191776..59239203, complement)

Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-2374 Neighboring gene 5-hydroxymethylcytosine binding, ES cell specific Neighboring gene H1.10 linker histone Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC127597

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phagosome-lysosome fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-7a
NP_001030253.1
XP_005223227.1
XP_010816303.1
XP_059735565.1
XP_059735566.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001035081.1 → NP_001030253.1  ras-related protein Rab-7a

    See identical proteins and their annotated locations for NP_001030253.1

    Status: PROVISIONAL

    Source sequence(s)
    BC102415
    UniProtKB/Swiss-Prot
    Q3T0F5
    Conserved Domains (2) summary
    smart00175
    Location:9 → 176
    RAB; Rab subfamily of small GTPases
    cd01862
    Location:9 → 179
    Rab7; Rab GTPase family 7 (Rab7)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    59191776..59239203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010818001.1 → XP_010816303.1  ras-related protein Rab-7a isoform X1

    See identical proteins and their annotated locations for XP_010816303.1

    Conserved Domains (1) summary
    cd01862
    Location:9 → 179
    Rab7; Rab GTPase family 7 (Rab7)

  2. XM_005223170.4 → XP_005223227.1  ras-related protein Rab-7a isoform X1

    See identical proteins and their annotated locations for XP_005223227.1

    Conserved Domains (1) summary
    cd01862
    Location:9 → 179
    Rab7; Rab GTPase family 7 (Rab7)

  3. XM_059879582.1 → XP_059735565.1  ras-related protein Rab-7a isoform X1

  4. XM_059879583.1 → XP_059735566.1  ras-related protein Rab-7a isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3T0F5.1 GenPept UniProtKB/Swiss-Prot:Q3T0F5

Gene LinkOut

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Molecular Biology Databases
Research Materials