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GNPTAB N-acetylglucosamine-1-phosphate transferase subunits alpha and beta [ Bos taurus (domestic cattle) ]

Gene ID: 509610, updated on 4-Oct-2024

Summary

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Official Symbol
GNPTABprovided by VGNC
Official Full Name
N-acetylglucosamine-1-phosphate transferase subunits alpha and betaprovided by VGNC
Primary source
VGNC:VGNC:29479
See related
BGD:BT25635; Ensembl:ENSBTAG00000019409
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See GNPTAB in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (65572215..65656010, complement)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene choline phosphotransferase 1 Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene synaptonemal complex protein 3 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene uncharacterized LOC132345308 Neighboring gene transfer RNA phenylalanine (anticodon AAA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
Names
N-acetylglucosamine-1-phosphate transferase alpha and beta subunits
NP_001179157.2
XP_010803443.1
XP_010803445.1
XP_024847332.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192228.2 → NP_001179157.2  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000005
    UniProtKB/TrEMBL
    F1MPB1
    Related
    ENSBTAP00000025859.6, ENSBTAT00000025859.7
    Conserved Domains (6) summary
    pfam06464
    Location:699 → 809
    DMAP_binding; DMAP1-binding Domain
    pfam00066
    Location:436 → 469
    Notch; LNR domain
    pfam11380
    Location:322 → 429
    Stealth_CR2; Stealth protein CR2, conserved region 2
    pfam17101
    Location:73 → 101
    Stealth_CR1; Stealth protein CR1, conserved region 1
    pfam17102
    Location:948 → 996
    Stealth_CR3; Stealth protein CR3, conserved region 3
    pfam17103
    Location:1131 → 1187
    Stealth_CR4; Stealth protein CR4, conserved region 4

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    65572215..65656010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024991564.2 → XP_024847332.1  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LVS0
    Conserved Domains (6) summary
    pfam06464
    Location:627 → 737
    DMAP_binding; DMAP1-binding Domain
    pfam00066
    Location:364 → 397
    Notch; LNR domain
    pfam11380
    Location:250 → 357
    Stealth_CR2; Stealth protein CR2, conserved region 2
    pfam17101
    Location:1 → 29
    Stealth_CR1; Stealth protein CR1, conserved region 1
    pfam17102
    Location:876 → 924
    Stealth_CR3; Stealth protein CR3, conserved region 3
    pfam17103
    Location:1059 → 1115
    Stealth_CR4; Stealth protein CR4, conserved region 4

  2. XM_010805141.3 → XP_010803443.1  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M570, F1MPB1
    Related
    ENSBTAP00000063430.1, ENSBTAT00000074108.2
    Conserved Domains (6) summary
    pfam00066
    Location:435 → 469
    Notch; LNR domain
    pfam06464
    Location:699 → 809
    DMAP_binding; DMAP1-binding Domain
    pfam11380
    Location:322 → 429
    Stealth_CR2; Stealth protein CR2, conserved region 2
    pfam17101
    Location:73 → 101
    Stealth_CR1; Stealth protein CR1, conserved region 1
    pfam17102
    Location:948 → 996
    Stealth_CR3; Stealth protein CR3, conserved region 3
    pfam17103
    Location:1093 → 1149
    Stealth_CR4; Stealth protein CR4, conserved region 4

  3. XM_010805143.4 → XP_010803445.1  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta isoform X3

    UniProtKB/TrEMBL
    A0A3Q1LVS0
    Conserved Domains (5) summary
    pfam00066
    Location:203 → 237
    Notch; LNR domain
    pfam06464
    Location:467 → 577
    DMAP_binding; DMAP1-binding Domain
    pfam11380
    Location:90 → 197
    Stealth_CR2; Stealth protein CR2, conserved region 2
    pfam17102
    Location:716 → 764
    Stealth_CR3; Stealth protein CR3, conserved region 3
    pfam17103
    Location:899 → 955
    Stealth_CR4; Stealth protein CR4, conserved region 4
Nucleotide Protein Strain
Heading Accession and Version

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