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CARF calcium responsive transcription factor [ Bos taurus (domestic cattle) ]

Gene ID: 509072, updated on 10-Oct-2024

Summary

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Official Symbol
CARFprovided by VGNC
Official Full Name
calcium responsive transcription factorprovided by VGNC
Primary source
VGNC:VGNC:26765
See related
BGD:BT22005; Ensembl:ENSBTAG00000016000
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ALS2CR8
Orthologs
human mouse all
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Genomic context

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See CARF in Genome Data Viewer
Location:
chromosome: 2
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (91230567..91318258)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene islet cell autoantigen 1 like Neighboring gene WD repeat domain 12 Neighboring gene large ribosomal subunit protein uL30-like Neighboring gene neurobeachin like 1 Neighboring gene cytochrome P450 family 20 subfamily A member 1 Neighboring gene abl interactor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-responsive transcription factor
Names
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8
amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032294.1 → NP_001027465.1  calcium-responsive transcription factor

    See identical proteins and their annotated locations for NP_001027465.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021831
    UniProtKB/Swiss-Prot
    Q58CW6
    UniProtKB/TrEMBL
    F1N5Z9
    Related
    ENSBTAP00000021288.6, ENSBTAT00000021288.6
    Conserved Domains (1) summary
    pfam15299
    Location:250 → 480
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    91230567..91318258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059892701.1 → XP_059748684.1  calcium-responsive transcription factor isoform X4

    UniProtKB/TrEMBL
    A0AAA9SP18
    Related
    ENSBTAP00000084629.1, ENSBTAT00000101239.1

  2. XM_059892689.1 → XP_059748672.1  calcium-responsive transcription factor isoform X2

    UniProtKB/TrEMBL
    A0AAA9TMP8

  3. XM_059892692.1 → XP_059748675.1  calcium-responsive transcription factor isoform X2

    UniProtKB/TrEMBL
    A0AAA9TMP8
    Related
    ENSBTAP00000098256.1, ENSBTAT00000121733.1

  4. XM_059892700.1 → XP_059748683.1  calcium-responsive transcription factor isoform X3

  5. XM_025000240.2 → XP_024856008.2  calcium-responsive transcription factor isoform X1

  6. XM_025000235.2 → XP_024856003.2  calcium-responsive transcription factor isoform X1

  7. XM_025000231.2 → XP_024855999.2  calcium-responsive transcription factor isoform X1

  8. XM_025000250.2 → XP_024856018.2  calcium-responsive transcription factor isoform X5

  9. XM_025000243.2 → XP_024856011.2  calcium-responsive transcription factor isoform X1

  10. XM_025000249.2 → XP_024856017.2  calcium-responsive transcription factor isoform X1

  11. XM_025000251.2 → XP_024856019.2  calcium-responsive transcription factor isoform X6

    Related
    ENSBTAP00000103918.1, ENSBTAT00000095413.1

  12. XM_025000259.2 → XP_024856027.2  calcium-responsive transcription factor isoform X7

  13. XM_059892710.1 → XP_059748693.1  calcium-responsive transcription factor isoform X7

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q58CW6.1 GenPept UniProtKB/Swiss-Prot:Q58CW6

Gene LinkOut

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Research Materials