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SLC39A8 solute carrier family 39 member 8 [ Bos taurus (domestic cattle) ]

Gene ID: 508193, updated on 4-Oct-2024

Summary

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Official Symbol
SLC39A8provided by VGNC
Official Full Name
solute carrier family 39 member 8provided by VGNC
Primary source
VGNC:VGNC:34868
See related
BGD:BT14355; Ensembl:ENSBTAG00000005668
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SLC39A8 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (22459081..22542658)

Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene nuclear factor kappa B subunit 1 Neighboring gene uncharacterized LOC112447046 Neighboring gene 60S ribosome subunit biogenesis protein NIP7 homolog Neighboring gene uncharacterized LOC112447149 Neighboring gene ubiquitin-like-conjugating enzyme ATG10 Neighboring gene transfer RNA cysteine (anticodon ACA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reproductive hormones influence zinc homeostasis in the bovine cumulus-oocyte complex: Impact on intracellular zinc concentration and transporters gene expression. Pascua AM, et al. Theriogenology, 2020 Apr 1. PMID 32036060
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular zinc ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in zinc ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metal cation symporter ZIP8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205630.1 → NP_001192559.1  metal cation symporter ZIP8 precursor

    See identical proteins and their annotated locations for NP_001192559.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000006
    UniProtKB/TrEMBL
    E1BQ28
    Related
    ENSBTAP00000007448.5, ENSBTAT00000007448.6
    Conserved Domains (1) summary
    pfam02535
    Location:126 → 452
    Zip; ZIP Zinc transporter

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    22459081..22542658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024993121.2 → XP_024848889.1  metal cation symporter ZIP8 isoform X1

    UniProtKB/TrEMBL
    E1BQ28
    Conserved Domains (1) summary
    pfam02535
    Location:126 → 452
    Zip; ZIP Zinc transporter

  2. XM_059887429.1 → XP_059743412.1  metal cation symporter ZIP8 isoform X2

  3. XM_024993122.2 → XP_024848890.1  metal cation symporter ZIP8 isoform X2

    Conserved Domains (1) summary
    pfam02535
    Location:55 → 381
    Zip; ZIP Zinc transporter
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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