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NDE1 nudE neurodevelopment protein 1 [ Bos taurus (domestic cattle) ]

Gene ID: 508088, updated on 4-Oct-2024

Summary

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Official Symbol
NDE1provided by VGNC
Official Full Name
nudE neurodevelopment protein 1provided by VGNC
Primary source
VGNC:VGNC:31932
See related
BGD:BT23001; Ensembl:ENSBTAG00000015986
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See NDE1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (14084545..14144218)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112444307 Neighboring gene meiosis regulator and mRNA stability factor 1 Neighboring gene microRNA mir-484 Neighboring gene myosin heavy chain 11 Neighboring gene centrosomal protein 20 Neighboring gene rho-related GTP-binding protein RhoA-B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in centrosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chromosome segregation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of chromosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of mitotic spindle orientation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic centrosome separation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of kinesin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear distribution protein nudE homolog 1
Names
nuclear distribution gene E homolog 1
nudE nuclear distribution gene E homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100321.1 → NP_001093791.1  nuclear distribution protein nudE homolog 1

    See identical proteins and their annotated locations for NP_001093791.1

    Status: PROVISIONAL

    Source sequence(s)
    BC148068
    UniProtKB/TrEMBL
    A0AAA9STZ3, A6QLS4
    Related
    ENSBTAP00000021265.5, ENSBTAT00000021265.6
    Conserved Domains (2) summary
    pfam04880
    Location:134 → 305
    NUDE_C; NUDE protein, C-terminal conserved region
    cl25732
    Location:27 → 186
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    14084545..14144218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005224719.5 → XP_005224776.1  nuclear distribution protein nudE homolog 1 isoform X1

    See identical proteins and their annotated locations for XP_005224776.1

    UniProtKB/TrEMBL
    A0AAA9STZ3
    Conserved Domains (3) summary
    PRK14160
    Location:1 → 188
    PRK14160; heat shock protein GrpE; Provisional
    pfam04880
    Location:134 → 305
    NUDE_C; NUDE protein, C-terminal conserved region
    cl03075
    Location:9 → 127
    GrpE; nucleotide exchange factor GrpE

  2. XM_005224718.5 → XP_005224775.1  nuclear distribution protein nudE homolog 1 isoform X1

    See identical proteins and their annotated locations for XP_005224775.1

    UniProtKB/TrEMBL
    A0AAA9STZ3
    Conserved Domains (3) summary
    PRK14160
    Location:1 → 188
    PRK14160; heat shock protein GrpE; Provisional
    pfam04880
    Location:134 → 305
    NUDE_C; NUDE protein, C-terminal conserved region
    cl03075
    Location:9 → 127
    GrpE; nucleotide exchange factor GrpE

  3. XM_005224720.5 → XP_005224777.1  nuclear distribution protein nudE homolog 1 isoform X2

    See identical proteins and their annotated locations for XP_005224777.1

    UniProtKB/TrEMBL
    A0AAA9STZ3, A6QLS4
    Conserved Domains (2) summary
    pfam04880
    Location:134 → 305
    NUDE_C; NUDE protein, C-terminal conserved region
    cl25732
    Location:27 → 186
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_005224722.5 → XP_005224779.1  nuclear distribution protein nudE homolog 1 isoform X4

    UniProtKB/TrEMBL
    A0AAA9STZ3
    Related
    ENSBTAP00000064711.2, ENSBTAT00000077996.2
    Conserved Domains (2) summary
    pfam04880
    Location:134 → 305
    NUDE_C; NUDE protein, C-terminal conserved region
    cl25732
    Location:27 → 186
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_005224721.5 → XP_005224778.1  nuclear distribution protein nudE homolog 1 isoform X3

    UniProtKB/TrEMBL
    A0AAA9STZ3
    Conserved Domains (2) summary
    pfam04880
    Location:134 → 305
    NUDE_C; NUDE protein, C-terminal conserved region
    cl25732
    Location:27 → 186
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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