The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference assembly

Genomic

1. NC_009029.2 Reference assembly

   Range

   84..10316

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. YP_001040007.1 flavivirus polyprotein [Kokobera virus]

   See identical proteins and their annotated locations for YP_001040007.1

   Status: PROVISIONAL

   UniProtKB/Swiss-Prot

   Q32ZD5

   UniProtKB/TrEMBL

   A0A076MKA0

   Conserved Domains (16) summary

   cd12149
   Location:594 → 686

   Flavi_E_C; Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E

   TIGR04240
   Location:691 → 787

   flavi_E_stem; flavivirus envelope glycoprotein E, stem/anchor domain

   pfam00948
   Location:789 → 1141

   Flavi_NS1; Flavivirus non-structural Protein NS1

   pfam01002
   Location:1366 → 1492

   Flavi_NS2B; Flavivirus non-structural protein NS2B

   pfam01005
   Location:1150 → 1277

   Flavi_NS2A; Flavivirus non-structural protein NS2A

   pfam01349
   Location:2258 → 2499

   Flavi_NS4B; Flavivirus non-structural protein NS4B

   pfam01350
   Location:2113 → 2255

   Flavi_NS4A; Flavivirus non-structural protein NS4A

   pfam00949
   Location:1511 → 1659

   Peptidase_S7; Peptidase S7, Flavivirus NS3 serine protease

   cd17038
   Location:215 → 286

   Flavi_M; Flavivirus envelope glycoprotein M

   cd18806
   Location:1825 → 1966

   SF2_C_viral; C-terminal helicase domain of viral helicase

   pfam00869
   Location:288 → 585

   Flavi_glycoprot; Flavivirus glycoprotein, central and dimerization domains

   pfam00972
   Location:2761 → 3401

   Flavi_NS5; Flavivirus RNA-directed RNA polymerase

   pfam01003
   Location:6 → 120

   Flavi_capsid; Flavivirus capsid protein C

   pfam01570
   Location:130 → 203

   Flavi_propep; Flavivirus polyprotein propeptide

   pfam07652
   Location:1676 → 1823

   Flavi_DEAD; Flavivirus DEAD domain

   pfam01728
   Location:2562 → 2734

   FtsJ; FtsJ-like methyltransferase

2. YP_009333118.1 anchored capsid protein anchC

3. YP_009333119.1 core protein C

4. YP_009333120.1 membrane glycoprotein precursor prM

5. YP_009333121.1 protein pr

6. YP_009333122.1 membrane glycoprotein M

7. YP_009333123.1 envelope protein E

8. YP_009333124.1 nonstructural protein NS1

9. YP_009333125.1 nonstructural protein NS2A

10. YP_009333126.1 nonstructural protein NS2B

11. YP_009333127.1 nonstructural protein NS3

12. YP_009333128.1 nonstructural protein NS4A

13. YP_009333129.1 protein 2K

14. YP_009333130.1 nonstructural protein NS4B

15. YP_009333131.1 RNA-dependent RNA polymerase NS5