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LZTR1 leucine zipper like transcription regulator 1 [ Bos taurus (domestic cattle) ]

Gene ID: 506776, updated on 10-Oct-2024

Summary

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Official Symbol
LZTR1provided by VGNC
Official Full Name
leucine zipper like transcription regulator 1provided by VGNC
Primary source
VGNC:VGNC:31120
See related
BGD:BT28465; Ensembl:ENSBTAG00000011292
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See LZTR1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (72326813..72339649)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene CRK like proto-oncogene, adaptor protein Neighboring gene apoptosis inducing factor mitochondria associated 3 Neighboring gene THAP domain containing 7 Neighboring gene tubulin, alpha 3e

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-zipper-like transcriptional regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192111.1 → NP_001179040.1  leucine-zipper-like transcriptional regulator 1

    Status: PROVISIONAL

    Source sequence(s)
    AAFC03118597, AAFC03129502
    UniProtKB/TrEMBL
    E1BLW3
    Related
    ENSBTAP00000015001.7, ENSBTAT00000015001.7
    Conserved Domains (8) summary
    PLN02153
    Location:112 → 417
    PLN02153; epithiospecifier protein
    smart00225
    Location:668 → 765
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd14821
    Location:574 → 634
    SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
    sd00038
    Location:68 → 114
    Kelch; KELCH repeat [structural motif]
    pfam00651
    Location:665 → 764
    BTB; BTB/POZ domain
    pfam01344
    Location:283 → 326
    Kelch_1; Kelch motif
    pfam13415
    Location:77 → 126
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:174 → 220
    Kelch_4; Galactose oxidase, central domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    72326813..72339649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059875913.1 → XP_059731896.1  leucine-zipper-like transcriptional regulator 1 isoform X3

  2. XM_059875914.1 → XP_059731897.1  leucine-zipper-like transcriptional regulator 1 isoform X3

  3. XM_059875912.1 → XP_059731895.1  leucine-zipper-like transcriptional regulator 1 isoform X1

  4. XM_024977095.2 → XP_024832863.1  leucine-zipper-like transcriptional regulator 1 isoform X2

    UniProtKB/TrEMBL
    E1BLW3
    Conserved Domains (5) summary
    cd14821
    Location:569 → 629
    SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
    sd00038
    Location:68 → 114
    Kelch; KELCH repeat [structural motif]
    pfam00651
    Location:660 → 748
    BTB; BTB/POZ domain
    pfam03089
    Location:367 → 420
    RAG2; Recombination activating protein 2
    cl26061
    Location:68 → 338
    PLN02193; nitrile-specifier protein
Nucleotide Protein Strain
Heading Accession and Version

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