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KATNA1 katanin catalytic subunit A1 [ Bos taurus (domestic cattle) ]

Gene ID: 506715, updated on 4-Oct-2024

Summary

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Official Symbol
KATNA1provided by VGNC
Official Full Name
katanin catalytic subunit A1provided by VGNC
Primary source
VGNC:VGNC:30405
See related
BGD:BT22995; Ensembl:ENSBTAG00000032024
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See KATNA1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (86816815..86851523, complement)

Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase like 4 Neighboring gene uncharacterized LOC132346135 Neighboring gene glycosylated integral membrane protein 1 Neighboring gene large tumor suppressor kinase 1 Neighboring gene nucleolin-like Neighboring gene nucleoporin 43

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule severing ATPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
katanin p60 ATPase-containing subunit A1
Names
katanin p60 (ATPase-containing) subunit A 1
NP_001179032.1
XP_005211089.1
XP_059745582.1
XP_059745583.1
XP_059745584.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192103.1 → NP_001179032.1  katanin p60 ATPase-containing subunit A1

    See identical proteins and their annotated locations for NP_001179032.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000009
    UniProtKB/TrEMBL
    E1BH39
    Related
    ENSBTAP00000001172.5, ENSBTAT00000001172.7
    Conserved Domains (3) summary
    pfam09336
    Location:451 → 489
    Vps4_C; Vps4 C terminal oligomerization domain
    pfam17862
    Location:403 → 447
    AAA_lid_3; AAA+ lid domain
    cd19522
    Location:210 → 379
    RecA-like_KTNA1; Katanin p60 ATPase-containing subunit A1

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    86816815..86851523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059889600.1 → XP_059745583.1  katanin p60 ATPase-containing subunit A1 isoform X1

    UniProtKB/TrEMBL
    E1BH39

  2. XM_005211032.5 → XP_005211089.1  katanin p60 ATPase-containing subunit A1 isoform X1

    See identical proteins and their annotated locations for XP_005211089.1

    UniProtKB/TrEMBL
    E1BH39
    Conserved Domains (3) summary
    pfam09336
    Location:451 → 489
    Vps4_C; Vps4 C terminal oligomerization domain
    pfam17862
    Location:403 → 447
    AAA_lid_3; AAA+ lid domain
    cd19522
    Location:210 → 379
    RecA-like_KTNA1; Katanin p60 ATPase-containing subunit A1

  3. XM_059889599.1 → XP_059745582.1  katanin p60 ATPase-containing subunit A1 isoform X1

    UniProtKB/TrEMBL
    E1BH39

  4. XM_059889601.1 → XP_059745584.1  katanin p60 ATPase-containing subunit A1 isoform X1

    UniProtKB/TrEMBL
    E1BH39
Nucleotide Protein Strain
Heading Accession and Version

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