U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TCEA1 transcription elongation factor A1 [ Bos taurus (domestic cattle) ]

Gene ID: 505722, updated on 12-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
TCEA1provided by VGNC
Official Full Name
transcription elongation factor A1provided by VGNC
Primary source
VGNC:VGNC:35679
See related
BGD:BT14857; Ensembl:ENSBTAG00000003460
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TCEA1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 14 NC_037341.1 (21961031..21990030, complement)

Chromosome 14 - NC_037341.1Genomic Context describing neighboring genes Neighboring gene opioid receptor kappa 1 Neighboring gene ATPase H+ transporting V1 subunit H Neighboring gene regulator of G protein signaling 20 Neighboring gene lysophospholipase 1 Neighboring gene mitochondrial ribosomal protein L15

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037341.1 Chromosome 14 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC137551

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription elongation factor A protein 1
Names
transcription elongation factor A (SII), 1
transcription elongation factor S-II protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045925.1 → NP_001039390.1  transcription elongation factor A protein 1

    See identical proteins and their annotated locations for NP_001039390.1

    Status: PROVISIONAL

    Source sequence(s)
    BC114117
    UniProtKB/Swiss-Prot
    Q29RL9
    UniProtKB/TrEMBL
    F1MIT2
    Related
    ENSBTAP00000103427.1, ENSBTAT00000129448.1
    Conserved Domains (1) summary
    TIGR01385
    Location:4 → 301
    TFSII; transcription elongation factor S-II

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037341.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    21961031..21990030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025001453.2 → XP_024857221.1  transcription elongation factor A protein 1 isoform X3

    UniProtKB/TrEMBL
    F1MIT2
    Conserved Domains (1) summary
    TIGR01385
    Location:4 → 300
    TFSII; transcription elongation factor S-II

  2. XM_025001452.2 → XP_024857220.1  transcription elongation factor A protein 1 isoform X2

    UniProtKB/TrEMBL
    F1MIT2
    Conserved Domains (1) summary
    cl02637
    Location:4 → 310
    TFIIS_M; Transcription factor S-II (TFIIS), central domain

  3. XM_025001451.2 → XP_024857219.1  transcription elongation factor A protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAF7AGL1, F1MIT2
    Related
    ENSBTAP00000068726.2, ENSBTAT00000083795.2
    Conserved Domains (1) summary
    cl02637
    Location:4 → 311
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q29RL9.1 GenPept UniProtKB/Swiss-Prot:Q29RL9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.