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BSDC1 BSD domain containing 1 [ Bos taurus (domestic cattle) ]

Gene ID: 505545, updated on 4-Oct-2024

Summary

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Official Symbol
BSDC1provided by VGNC
Official Full Name
BSD domain containing 1provided by VGNC
Primary source
VGNC:VGNC:26578
See related
BGD:BT28931; Ensembl:ENSBTAG00000020655
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See BSDC1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (121176424..121199336)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 8A Neighboring gene large ribosomal subunit protein uL29-like Neighboring gene zinc finger and BTB domain containing 8B Neighboring gene uncharacterized LOC112443204 Neighboring gene family with sequence similarity 229 member A Neighboring gene testis specific serine kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC128906

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BSD domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001035026.1 → NP_001030198.2  BSD domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    BC104548
    UniProtKB/Swiss-Prot
    Q3SX22
    UniProtKB/TrEMBL
    A0A3Q1M8E3
    Related
    ENSBTAP00000066383.1, ENSBTAT00000067186.2
    Conserved Domains (2) summary
    pfam03909
    Location:178 → 234
    BSD; BSD domain
    cl25751
    Location:264 → 441
    DUF4045; Domain of unknown function (DUF4045)

  2. NM_001253722.1 → NP_001240651.1  BSD domain-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes an alternate exon in the 5' UTR and coding sequence, compared to variant 1. It encodes isoform b, which is shorter and has a distinct N-terminus, compared to isoform a.
    Source sequence(s)
    BC104548, DV876472, DV915317, EH198661, EV669786
    UniProtKB/Swiss-Prot
    Q3SX22
    UniProtKB/TrEMBL
    A0A452DIZ0
    Related
    ENSBTAP00000027526.4, ENSBTAT00000027526.4
    Conserved Domains (2) summary
    pfam03909
    Location:146 → 202
    BSD; BSD domain
    cl26464
    Location:229 → 353
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    121176424..121199336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3SX22.1 GenPept UniProtKB/Swiss-Prot:Q3SX22

Gene LinkOut

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Molecular Biology Databases
Research Materials