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LTBR lymphotoxin beta receptor [ Bos taurus (domestic cattle) ]

Gene ID: 504653, updated on 4-Oct-2024

Summary

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Official Symbol
LTBRprovided by VGNC
Official Full Name
lymphotoxin beta receptorprovided by VGNC
Primary source
VGNC:VGNC:31075
See related
Ensembl:ENSBTAG00000015312
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See LTBR in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (103976078..103983848, complement)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene vesicle associated membrane protein 1 Neighboring gene TAP binding protein like Neighboring gene CD27 molecule Neighboring gene sodium channel epithelial 1 subunit alpha Neighboring gene uncharacterized LOC100847453 Neighboring gene TNF receptor superfamily member 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC152267

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hematopoietic or lymphoid organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 3
Names
lymphotoxin beta receptor (TNFR superfamily, member 3)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001103228.2 → NP_001096698.1  tumor necrosis factor receptor superfamily member 3 precursor

    See identical proteins and their annotated locations for NP_001096698.1

    Status: PROVISIONAL

    Source sequence(s)
    BC149639
    UniProtKB/TrEMBL
    A6QQ46
    Related
    ENSBTAP00000020355.4, ENSBTAT00000020355.6
    Conserved Domains (3) summary
    cd00185
    Location:177 → 217
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 175
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:155 → 218
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    103976078..103983848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024991440.2 → XP_024847208.1  tumor necrosis factor receptor superfamily member 3 isoform X1

    UniProtKB/TrEMBL
    A0AAA9RZW6
    Related
    ENSBTAP00000079145.1, ENSBTAT00000127250.1
    Conserved Domains (3) summary
    cd00185
    Location:177 → 217
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 175
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:155 → 218
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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