zgc:112982 zgc:112982 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:112982provided by ZNC
Official Full Name: zgc:112982provided by ZNC
Primary source: ZFIN:ZDB-GENE-050306-55
See related: Ensembl:ENSDARG00000001829 AllianceGenome:ZFIN:ZDB-GENE-050306-55
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb48h12; fb93h01; wu:fb48h12; wu:fb93h01
Summary: Orthologous to human BCLAF3 (BCLAF1 and THRAP3 family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 24

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	24	NC_007135.7 (24101807..24118398, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	24	NC_007135.6 (23956637..23973237, complement)

Chromosome 24 - NC_007135.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

fb93h01.x1 (e-PCR)
- UniSTS:191803

fc85g09.y1 (e-PCR)
- UniSTS:194664

General protein information

Go to the top of the page Help

Preferred Names: uncharacterized protein LOC503771

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001013349.1 → NP_001013367.1 uncharacterized protein LOC503771 isoform 2

See identical proteins and their annotated locations for NP_001013367.1

Status: PREDICTED

Source sequence(s)

BC090708

UniProtKB/TrEMBL

Q5CZU1

Related

ENSDARP00000027078.7, ENSDART00000024606.9

Conserved Domains (1) summary

pfam15440
Location:16 → 49

THRAP3_BCLAF1; THRAP3/BCLAF1 family
NM_001430902.1 → NP_001417831.1 uncharacterized protein LOC503771 isoform 1

Status: VALIDATED

Source sequence(s)

CT574587

UniProtKB/TrEMBL

A0A8M3AVZ8

Related

ENSDARP00000101451.3, ENSDART00000111096.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007135.7 Reference GRCz11 Primary Assembly

Range

24101807..24118398 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005162696.5 → XP_005162753.1 uncharacterized protein LOC503771 isoform X1

UniProtKB/TrEMBL

A0A8M2B9X5

Conserved Domains (2) summary

pfam10243
Location:242 → 412

MIP-T3; Microtubule-binding protein MIP-T3

pfam15440
Location:397 → 492

THRAP3_BCLAF1; THRAP3/BCLAF1 family