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LOC503678 uncharacterized LOC503678 [ Xenopus laevis (African clawed frog) ]

Gene ID: 503678, updated on 1-Jun-2022

Summary

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Gene symbol
LOC503678
Gene description
uncharacterized LOC503678
Locus tag
XELAEV_18036152mg
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC503678 in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (120587868..120625681)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (110048320..110086193)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 L homeolog Neighboring gene potassium inwardly rectifying channel subfamily J member 14 L homeolog Neighboring gene neuronal pentraxin-1 Neighboring gene toll-like receptor 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC503678

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095567.1 → NP_001089036.1  uncharacterized protein LOC503678

    See identical proteins and their annotated locations for NP_001089036.1

    Status: PREDICTED

    Source sequence(s)
    BC078107
    UniProtKB/TrEMBL
    Q6DCE0
    Conserved Domains (2) summary
    pfam04880
    Location:18 → 59
    NUDE_C; NUDE protein, C-terminal conserved region
    cl00136
    Location:61 → 130
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    120587868..120625681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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