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rad21.S RAD21 cohesin complex component S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 503676, updated on 18-Sep-2024

Summary

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Official Symbol
rad21.S
Official Full Name
RAD21 cohesin complex component S homeolog
Primary source
Xenbase:XB-GENE-6078649
Locus tag
XELAEV_18033959mg
See related
EnsemblRapid:ENSXLAG00005021908
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hr21; mcd1; nxp1; scc1; nxp-1; rad21; xrad21
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Genomic context

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See rad21.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (122891662..122918565, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (114226102..114252792, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit H S homeolog Neighboring gene UTP23, small subunit processome component S homeolog Neighboring gene solute carrier family 30 (zinc transporter), member 8 S homeolog Neighboring gene uncharacterized LOC121395176

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. rad21 Is Involved in Corneal Stroma Development by Regulating Neural Crest Migration. Zhang BN, et al. Int J Mol Sci, 2020 Oct 21. PMID 33096935, Free PMC Article
  2. Functional contribution of Pds5 to cohesin-mediated cohesion in human cells and Xenopus egg extracts. Losada A, et al. J Cell Sci, 2005 May 15. PMID 15855230
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. rad21 Is Involved in Corneal Stroma Development by Regulating Neural Crest Migration.
    Title: rad21 Is Involved in Corneal Stroma Development by Regulating Neural Crest Migration.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromosome segregation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within replication-born double-strand break repair via sister chromatid exchange IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  
part_of cohesin complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RAD21 cohesin complex component S homeolog
Names
RAD21 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095565.1 → NP_001089034.1  RAD21 cohesin complex component S homeolog

    See identical proteins and their annotated locations for NP_001089034.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077991
    UniProtKB/TrEMBL
    A0A974CPA1, A0A974HEW1, Q6DCL7
    Related
    ENSXLAP00005064433.1, ENSXLAT00005065945.1
    Conserved Domains (2) summary
    pfam04824
    Location:572 → 626
    Rad21_Rec8; Conserved region of Rad21 / Rec8 like protein
    pfam04825
    Location:1 → 104
    Rad21_Rec8_N; N terminus of Rad21 / Rec8 like protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    122891662..122918565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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