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arfrp1 ADP-ribosylation factor related protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 503602, updated on 14-Sep-2024

Summary

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Official Symbol
arfrp1provided by ZNC
Official Full Name
ADP-ribosylation factor related protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050227-14
See related
Ensembl:ENSDARG00000057857 AllianceGenome:ZFIN:ZDB-GENE-050227-14
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:113118
Summary
Predicted to enable GTP binding activity. Predicted to be involved in Golgi to plasma membrane protein transport; intracellular protein transport; and protein localization to organelle. Predicted to be active in Golgi apparatus. Orthologous to human ARFRP1 (ADP ribosylation factor related protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See arfrp1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (58522634..58533132)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (58528368..58538023)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily KQT member 2 Neighboring gene neuronal acetylcholine receptor subunit alpha-4 Neighboring gene stathmin-like 3 Neighboring gene helicase with zinc finger 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in Golgi to plasma membrane protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein localization to Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ADP-ribosylation factor-related protein 1
NP_001013307.1
XP_005166227.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013289.2 → NP_001013307.1  ADP-ribosylation factor-related protein 1

    See identical proteins and their annotated locations for NP_001013307.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090265
    UniProtKB/TrEMBL
    A0A8M1N4A6, Q5EAS5
    Related
    ENSDARP00000129349.1, ENSDART00000157327.2
    Conserved Domains (1) summary
    cd04160
    Location:19 → 186
    Arfrp1; Arf-related protein 1 (Arfrp1)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    58522634..58533132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166170.4 → XP_005166227.1  ADP-ribosylation factor-related protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BDM9, E7FAS3
    Related
    ENSDARP00000109919.1, ENSDART00000128062.4
    Conserved Domains (2) summary
    cd04160
    Location:19 → 186
    Arfrp1; Arf-related protein 1 (Arfrp1)
    pfam00071
    Location:20 → 189
    Ras; Ras family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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