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ripor3 RIPOR family member 3 [ Danio rerio (zebrafish) ]

Gene ID: 503535, updated on 10-Sep-2024

Summary

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Official Symbol
ripor3provided by ZNC
Official Full Name
RIPOR family member 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-050220-13
See related
Ensembl:ENSDARG00000020979 AllianceGenome:ZFIN:ZDB-GENE-050220-13
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fam65c; zgc:113070; si:dkey-107i16.2
Summary
Orthologous to human RIPOR3 (RIPOR family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (51676186..51763503)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (51676200..51763504)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene retinoblastoma-like 1 (p107) Neighboring gene chromodomain helicase DNA binding protein 6 Neighboring gene transmembrane protein 74B Neighboring gene bladder cancer associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Maternal Ybx1 safeguards zebrafish oocyte maturation and maternal-to-zygotic transition by repressing global translation. Sun J, et al. Development, 2018 Oct 2. PMID 30135188
  2. Global analysis of the haematopoietic and endothelial transcriptome during zebrafish development. Cannon JE, et al. Mech Dev, 2013 Feb. PMID 23072875, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RIPOR family member 3; protein FAM65C
Names
family with sequence similarity 65, member C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012499.3 → NP_001012517.2  RIPOR family member 3

    Status: VALIDATED

    Source sequence(s)
    BX001037, BX571978
    UniProtKB/Swiss-Prot
    Q5EB20
    UniProtKB/TrEMBL
    A0A8M3ATQ2
    Related
    ENSDARP00000119471.1, ENSDART00000146281.2

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    51676186..51763503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009302697.3 → XP_009300972.1  protein FAM65C isoform X2

    UniProtKB/Swiss-Prot
    Q5EB20
    UniProtKB/TrEMBL
    A0A8M3ATQ2
    Conserved Domains (3) summary
    pfam13646
    Location:855 → 941
    HEAT_2; HEAT repeats
    pfam15903
    Location:16 → 360
    PL48; Filopodia upregulated, FAM65
    sd00044
    Location:821 → 842
    HEAT; HEAT repeat [structural motif]

  2. XM_005166267.4 → XP_005166324.1  protein FAM65C isoform X1

    UniProtKB/Swiss-Prot
    Q5EB20
    UniProtKB/TrEMBL
    A0A8M2BDS6, F1R2W2
    Conserved Domains (3) summary
    pfam13646
    Location:874 → 960
    HEAT_2; HEAT repeats
    pfam15903
    Location:35 → 379
    PL48; Filopodia upregulated, FAM65
    sd00044
    Location:840 → 861
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5EB20.1 GenPept UniProtKB/Swiss-Prot:Q5EB20

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