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Ankar ankyrin and armadillo repeat containing [ Rattus norvegicus (Norway rat) ]

Gene ID: 501138, updated on 2-Nov-2024

Summary

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Official Symbol
Ankarprovided by RGD
Official Full Name
ankyrin and armadillo repeat containingprovided by RGD
Primary source
RGD:1561071
See related
EnsemblRapid:ENSRNOG00000003991 AllianceGenome:RGD:1561071
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561071
Summary
Orthologous to human ANKAR (ankyrin and armadillo repeat containing). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 192.1), Heart (RPKM 18.9) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ankar in Genome Data Viewer
Location:
9q22
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (55633681..55709721)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (48141534..48215400)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (53011561..53086178)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 40 member 1 Neighboring gene proteolipid protein 2 like 1 Neighboring gene ASNSD1 upstream open reading frame Neighboring gene asparagine synthetase domain containing 1 Neighboring gene O-sialoglycoprotein endopeptidase-like 1 Neighboring gene PMS1 homolog 1, mismatch repair system component Neighboring gene ORMDL sphingolipid biosynthesis regulator 1 Neighboring gene large ribosomal subunit protein eL37-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin and armadillo repeat containing; ankyrin and armadillo repeat-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431342.1 → NP_001418271.1  ankyrin and armadillo repeat containing isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009

  2. NM_001431343.1 → NP_001418272.1  ankyrin and armadillo repeat containing isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009

  3. NM_001431344.1 → NP_001418273.1  ankyrin and armadillo repeat containing isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009

  4. NM_001431345.1 → NP_001418274.1  ankyrin and armadillo repeat containing isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    55633681..55709721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084559.2 → XP_038940487.1  ankyrin and armadillo repeat-containing protein isoform X1

    Conserved Domains (5) summary
    PHA02874
    Location:521 → 648
    PHA02874; ankyrin repeat protein; Provisional
    PLN03200
    Location:717 → 1130
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00045
    Location:614 → 648
    ANK; ANK repeat [structural motif]
    sd00043
    Location:750 → 781
    ARM; armadillo repeat [structural motif]
    pfam12796
    Location:586 → 681
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_039084557.2 → XP_038940485.1  ankyrin and armadillo repeat-containing protein isoform X1

    Conserved Domains (5) summary
    PHA02874
    Location:521 → 648
    PHA02874; ankyrin repeat protein; Provisional
    PLN03200
    Location:717 → 1130
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00045
    Location:614 → 648
    ANK; ANK repeat [structural motif]
    sd00043
    Location:750 → 781
    ARM; armadillo repeat [structural motif]
    pfam12796
    Location:586 → 681
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_063268120.1 → XP_063124190.1  ankyrin and armadillo repeat-containing protein isoform X2

    Related
    ENSRNOP00000005314.8, ENSRNOT00000005313.9

  4. XM_039084558.2 → XP_038940486.1  ankyrin and armadillo repeat-containing protein isoform X1

    Conserved Domains (5) summary
    PHA02874
    Location:521 → 648
    PHA02874; ankyrin repeat protein; Provisional
    PLN03200
    Location:717 → 1130
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00045
    Location:614 → 648
    ANK; ANK repeat [structural motif]
    sd00043
    Location:750 → 781
    ARM; armadillo repeat [structural motif]
    pfam12796
    Location:586 → 681
    Ank_2; Ankyrin repeats (3 copies)

RNA

  1. XR_005489135.2 RNA Sequence

  2. XR_005489134.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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