Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source: TAIR:AT4G21065
Locus tag: AT4G21065
See related: Araport:AT4G21065
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 1

Sequence:: Chromosome: 4; NC_003075.7 (11245790..11247807)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

Orthologs from OrthoDB

NM_001084945.2

Supported by ESTs:

NM_001084946.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in RNA modification	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Tetratricopeptide repeat (TPR)-like superfamily protein

NP_001078414.1

Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G59720.1); Has 38274 Blast hits to 14497 proteins in 292 species: Archae - 1; Bacteria - 13; Metazoa - 163; Fungi - 128; Plants - 37354; Viruses - 0; Other Eukaryotes - 615 (source: NCBI BLink).

NP_001078415.1

Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33170.1); Has 42394 Blast hits to 14278 proteins in 275 species: Archae - 0; Bacteria - 13; Metazoa - 126; Fungi - 79; Plants - 41597; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

11245790..11247807

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001084945.2 → NP_001078414.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078414.1

Status: REVIEWED

UniProtKB/Swiss-Prot

A8MQA3

UniProtKB/TrEMBL

A0A178V0U2, A0A5S9XUC3, A0A654FRE2

Conserved Domains (2) summary

PLN03081
Location:84 → 595

PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional

sd00004
Location:189 → 216

PPR; PPR repeat [structural motif]
NM_001084946.1 → NP_001078415.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078415.1

Status: REVIEWED

UniProtKB/Swiss-Prot

A8MQA3

Conserved Domains (5) summary

TIGR00756
Location:55 → 88

PPR; pentatricopeptide repeat domain (PPR motif)

sd00004
Location:56 → 83

PPR; PPR repeat [structural motif]

pfam01535
Location:128 → 154

PPR; PPR repeat

pfam13041
Location:52 → 101

PPR_2; PPR repeat family

pfam14432
Location:328 → 452

DYW_deaminase; DYW family of nucleic acid deaminases