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Fam78a family with sequence similarity 78, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 499776, updated on 2-Nov-2024

Summary

Official Symbol
Fam78aprovided by RGD
Official Full Name
family with sequence similarity 78, member Aprovided by RGD
Primary source
RGD:1566351
See related
EnsemblRapid:ENSRNOG00000023352 AllianceGenome:RGD:1566351
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1566351
Summary
Orthologous to human FAM78A (family with sequence similarity 78 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 153.8), Muscle (RPKM 104.9) and 9 other tissues See more
Orthologs
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Genomic context

See Fam78a in Genome Data Viewer
Location:
3p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (35753712..35771600, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (15355958..15376330, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (11086016..11105151, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene allograft inflammatory factor 1-like Neighboring gene nucleoporin 214 Neighboring gene uncharacterized LOC134486353 Neighboring gene phospholipid phosphatase 7 (inactive)

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399463.1NP_001386392.1  protein FAM78A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    D3ZW92
    Related
    ENSRNOP00000032068.3, ENSRNOT00000035580.6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    35753712..35771600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_575110.9XP_575110.2  protein FAM78A isoform X1

    See identical proteins and their annotated locations for XP_575110.2

    UniProtKB/TrEMBL
    D3ZW92