Lhfpl6 LHFPL tetraspan subfamily member 6 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Lhfpl6provided by RGD
Official Full Name: LHFPL tetraspan subfamily member 6provided by RGD
Primary source: RGD:1560177
See related: EnsemblRapid:ENSRNOG00000014153 AllianceGenome:RGD:1560177
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Lhfp; RGD1560177
Summary: Predicted to be active in membrane. Orthologous to human LHFPL6 (LHFPL tetraspan subfamily member 6). [provided by Alliance of Genome Resources, Oct 2024]
Expression: Biased expression in Lung (RPKM 179.1), Heart (RPKM 121.5) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 2q26

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	2	NC_086020.1 (139276810..139474740)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	2	NC_051337.1 (137126485..137324442)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	2	NC_005101.4 (142262236..142461980)

Chromosome 2 - NC_086020.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

AU046805 (e-PCR)
- UniSTS:111118

BI281007 (e-PCR)
- UniSTS:249381

D2Rat220 (e-PCR), detects polymorphism
- UniSTS:227375

AA956142 (e-PCR)
- UniSTS:247353

BI281007 (e-PCR)
- UniSTS:261719

RH143913 (e-PCR)
- UniSTS:233159

RH141719 (e-PCR)
- UniSTS:223712

D2Chm33 (e-PCR)
- UniSTS:517873

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: LHFPL tetraspan subfamily member 6 protein

Names: lipoma HMGIC fusion partner

NP_001102653.1

EC 3.6.5.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.