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Ccdc71 coiled-coil domain containing 71 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498678, updated on 17-Aug-2024

Summary

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Official Symbol
Ccdc71provided by RGD
Official Full Name
coiled-coil domain containing 71provided by RGD
Primary source
RGD:1566341
See related
EnsemblRapid:ENSRNOG00000048718 AllianceGenome:RGD:1566341
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in cellular lipid metabolic process and positive regulation of fat cell differentiation. Orthologous to human CCDC71 (coiled-coil domain containing 71). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 42.9), Spleen (RPKM 42.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc71 in Genome Data Viewer
Location:
8q32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (118025192..118040143)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109146650..109161749)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117236933..117251573)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene interactor of HORMAD1 1 Neighboring gene similar to human chromosome 3 open reading frame 84 Neighboring gene kelch domain containing 8B Neighboring gene laminin subunit beta 2 Neighboring gene ubiquitin specific peptidase 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Distinctive genes determine different intramuscular fat and muscle fiber ratios of the longissimus dorsi muscles in Jinhua and landrace pigs. Wu T, et al. PLoS One, 2013. PMID 23301040, Free PMC Article
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC116171

General protein information

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Preferred Names
coiled-coil domain-containing protein 71

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024904.1 → NP_001020075.1  coiled-coil domain-containing protein 71

    See identical proteins and their annotated locations for NP_001020075.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098020
    UniProtKB/Swiss-Prot
    Q4V7C4
    UniProtKB/TrEMBL
    A6I358
    Related
    ENSRNOP00000108532.1, ENSRNOT00000150571.1
    Conserved Domains (1) summary
    pfam15374
    Location:8 → 433
    CCDC71L; Coiled-coil domain-containing protein 71L

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    118025192..118040143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006243832.4 → XP_006243894.1  coiled-coil domain-containing protein 71 isoform X1

    UniProtKB/TrEMBL
    A0A8L2QWS1
    Conserved Domains (1) summary
    pfam15374
    Location:38 → 463
    CCDC71L; Coiled-coil domain-containing protein 71L

  2. XM_039081903.2 → XP_038937831.1  coiled-coil domain-containing protein 71 isoform X2

    UniProtKB/Swiss-Prot
    Q4V7C4
    UniProtKB/TrEMBL
    A6I358
    Related
    ENSRNOP00000097250.1, ENSRNOT00000100156.2
    Conserved Domains (1) summary
    pfam15374
    Location:8 → 433
    CCDC71L; Coiled-coil domain-containing protein 71L
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V7C4.1 GenPept UniProtKB/Swiss-Prot:Q4V7C4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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