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An12g07500 uncharacterized protein [ Aspergillus niger ]

Gene ID: 4986099, updated on 31-Oct-2024

Summary

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Gene symbol
An12g07500
Gene description
uncharacterized protein
Locus tag
An12g07500
See related
FungiDB:An12g07500; VEuPathDB:An12g07500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus niger
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati
Orthologs
Aspergillus fumigatus all
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Genomic context

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See An12g07500 in Genome Data Viewer
Location:
chromosome: III, map: unlocalized, clone: An12
Exon count:
8

NT_166527.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_166527.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Pel HJ, et al. Nat Biotechnol, 2007 Feb. PMID 17259976
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
XP_001395799.1
  • Catalytic activity: {(1,4)-alpha-D-galacturonide}(N) + H(2)O = {(1,4)-alpha-D- galacturonide}(N-1) + D-galacturonate.;
    Function: pgaX is an exopolygalacturonase [poly(1,4-alpha-D-galacturonide)galacturonohydrolase] that cleaves monomer units from the non-reducing end of pectate and other galacturonans.;
    Induction: expression of the pgaX gene is inducible with galacturonic acid.;
    Repression: expression of the pgaX gene is subject to catabolite repression.;
    Title: strong similarity to exopolygalacturonase pgaX - Aspergillus tubingensis;
    extracellular/secretion proteins;
    See PMID 10467119;
    See PMID 8856078

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_166527.1 Reference assembly

    Range
    1804231..1805915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001395762.1 → XP_001395799.1  uncharacterized protein An12g07500 [Aspergillus niger]

    See identical proteins and their annotated locations for XP_001395799.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A2R060, Q27UB3
    UniProtKB/TrEMBL
    A0A370C7W4, A0A505IAG2, A0A9W5ZAF6, G3XW55
    Conserved Domains (1) summary
    cl26318
    Location:139 → 421
    Glyco_hydro_28; Glycosyl hydrolases family 28
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q27UB3.1

Gene LinkOut

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Molecular Biology Databases
Research Materials