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rhgA rhamnogalacturonase rhgA-Aspergillus niger [ Aspergillus niger ]

Gene ID: 4985445, updated on 17-May-2024

Summary

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Gene symbol
rhgA
Gene description
rhamnogalacturonase rhgA-Aspergillus niger
Locus tag
An12g00950
See related
FungiDB:An12g00950; VEuPathDB:An12g00950
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus niger
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati
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Genomic context

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See rhgA in Genome Data Viewer
Location:
chromosome: III, map: unlocalized, clone: An12
Exon count:
4

NT_166527.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_166527.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonase rhgA-Aspergillus niger
XP_001395184.1
  • Catalytic activity: Random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans.;
    Gene-ID: rhgA;
    Remark: the differences in the protein sequence could be determined among sequencing errors or strain variations.;
    See PMID 8929397;
    See PMID 9212401

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_166527.1 Reference assembly

    Range
    259520..261024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001395147.1 → XP_001395184.1  rhamnogalacturonase rhgA-Aspergillus niger [Aspergillus niger]

    See identical proteins and their annotated locations for XP_001395184.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A2QYE5
    UniProtKB/TrEMBL
    A0A254ULL9, A0A319A198, G3XUV1
    Conserved Domains (2) summary
    pfam12708
    Location:40 → 214
    Pectate_lyase_3; Pectate lyase superfamily protein
    cl26318
    Location:146 → 370
    Glyco_hydro_28; Glycosyl hydrolases family 28
Nucleotide Protein
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