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Ccdc60 coiled-coil domain containing 60 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498190, updated on 17-Aug-2024

Summary

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Official Symbol
Ccdc60provided by RGD
Official Full Name
coiled-coil domain containing 60provided by RGD
Primary source
RGD:1564283
See related
EnsemblRapid:ENSRNOG00000032684 AllianceGenome:RGD:1564283
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CCDC60 (coiled-coil domain containing 60). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward (RPKM 128.1) See more
Orthologs
human mouse all
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Genomic context

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Location:
12q16
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (45975394..46141078)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (40314687..40480338)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (46042422..46206748)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481301 Neighboring gene uncharacterized LOC134481336 Neighboring gene uncharacterized LOC102547467 Neighboring gene transmembrane protein 233 Neighboring gene protein kinase AMP-activated non-catalytic subunit beta 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC124983

General protein information

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Preferred Names
coiled-coil domain-containing protein 60

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034945.2 → NP_001030117.1  coiled-coil domain-containing protein 60

    See identical proteins and their annotated locations for NP_001030117.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/Swiss-Prot
    Q3ZAV0
    UniProtKB/TrEMBL
    A0A8I6AHS0
    Related
    ENSRNOP00000092822.1, ENSRNOT00000098883.2
    Conserved Domains (1) summary
    pfam15769
    Location:58 → 531
    DUF4698; Domain of unknown function (DUF4698)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    45975394..46141078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006249464.4 → XP_006249526.1  coiled-coil domain-containing protein 60 isoform X1

    UniProtKB/TrEMBL
    A0A140TAG2, A0A8I6AHS0
    Related
    ENSRNOP00000048419.4, ENSRNOT00000046882.6
    Conserved Domains (1) summary
    pfam15769
    Location:58 → 532
    DUF4698; Domain of unknown function (DUF4698)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3ZAV0.1 GenPept UniProtKB/Swiss-Prot:Q3ZAV0

Gene LinkOut

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