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Lyrm9 LYR motif containing 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 497962, updated on 19-Sep-2024

Summary

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Official Symbol
Lyrm9provided by RGD
Official Full Name
LYR motif containing 9provided by RGD
Primary source
RGD:1562012
See related
EnsemblRapid:ENSRNOG00000037204 AllianceGenome:RGD:1562012
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562012
Summary
Orthologous to human LYRM9 (LYR motif containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 74.9), Muscle (RPKM 57.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Lyrm9 in Genome Data Viewer
Location:
10q25
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (64223732..64237791)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (63725718..63739772)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (66099478..66113559)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene nemo like kinase Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4-like Neighboring gene cyclin Q Neighboring gene LYR motif containing 9 like 1 Neighboring gene uncharacterized LOC120095150 Neighboring gene NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase, pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 PubMed 

General protein information

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Preferred Names
LYR motif-containing protein 9
Names
UPF0631 protein C17orf108 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173471.1 → NP_001166942.1  LYR motif-containing protein 9

    See identical proteins and their annotated locations for NP_001166942.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/Swiss-Prot
    B2RZD7
    Related
    ENSRNOP00000053037.2, ENSRNOT00000056192.5
    Conserved Domains (1) summary
    cd20269
    Location:13 → 73
    Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    64223732..64237791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008768097.4 → XP_008766319.1  LYR motif-containing protein 9 isoform X1

    Conserved Domains (1) summary
    cd20269
    Location:13 → 80
    Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2RZD7.1 GenPept UniProtKB/Swiss-Prot:B2RZD7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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