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abfA alpha-l-arabinofuranosidase a precursor abfA-Aspergillus niger [ Aspergillus niger ]

Gene ID: 4978177, updated on 17-May-2024

Summary

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Gene symbol
abfA
Gene description
alpha-l-arabinofuranosidase a precursor abfA-Aspergillus niger
Locus tag
An01g00330
See related
FungiDB:An01g00330; VEuPathDB:An01g00330
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus niger
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati
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Genomic context

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See abfA in Genome Data Viewer
Location:
chromosome: II, map: unlocalized, clone: An01
Exon count:
8

NT_166518.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Ala

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_166518.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Pel HJ, et al. Nat Biotechnol, 2007 Feb. PMID 17259976
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-l-arabinofuranosidase a precursor abfA-Aspergillus niger
XP_001388482.1
  • Catalytic activity: hydrolysis of terminal non-reducing alpha-l-arabinofuranoside residues in alpha-l-arabinosides.;
    Function: acts only on small linear 1,5-alpha-linked l-arabinofuranosyl oligosaccharide.;
    Gene-ID: abfA;arfA;awabfA;exoA;
    Pathway: involved in degradation of the plant cell wall polysaccharide l-arabinan.;
    See PMID 7764056;
    See PMID 8000538

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_166518.1 Reference assembly

    Range
    77956..80194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001388445.1 → XP_001388482.1  alpha-l-arabinofuranosidase a precursor abfA-Aspergillus niger [Aspergillus niger]

    See identical proteins and their annotated locations for XP_001388482.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A2Q7E0, P42254
    UniProtKB/TrEMBL
    A0A370C057, D6QST5, G3XTH2
    Conserved Domains (1) summary
    smart00813
    Location:452 → 620
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus
Nucleotide Protein
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