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pgaI polygalacturonase pgaI-Aspergillus niger [ Aspergillus niger ]

Gene ID: 4978020, updated on 31-Oct-2024

Summary

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Gene symbol
pgaI
Gene description
polygalacturonase pgaI-Aspergillus niger
Locus tag
An01g11520
See related
FungiDB:An01g11520; VEuPathDB:An01g11520
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus niger
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati
Orthologs
Aspergillus fumigatus all
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Genomic context

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See pgaI in Genome Data Viewer
Location:
chromosome: II, map: unlocalized, clone: An01
Exon count:
3

NT_166518.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_166518.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Pel HJ, et al. Nat Biotechnol, 2007 Feb. PMID 17259976
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase pgaI-Aspergillus niger
XP_001389562.1
  • Catalytic activity: random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans.;
    Gene-ID: pgaI;
    Pathway: pentose and glucuronate interconversions; starch and sucrose metabolism.;
    Remark: strong similarity to prepro-polygalacturonase I patent EP421919-A from Aspergillus niger.;
    See PMID 10945680;
    See PMID 1934135

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_166518.1 Reference assembly

    Range
    2707839..2709059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001389525.1 → XP_001389562.1  polygalacturonase pgaI-Aspergillus niger [Aspergillus niger]

    See identical proteins and their annotated locations for XP_001389562.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A2QAH3, P26213
    UniProtKB/TrEMBL
    A0A254TWL6, A0A319AR06, A0A370BMU4, A0A9W6ECZ1, G3XQY4
    Conserved Domains (1) summary
    pfam00295
    Location:52 → 368
    Glyco_hydro_28; Glycosyl hydrolases family 28
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P26213.1

Gene LinkOut

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Molecular Biology Databases
Research Materials