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si:ch211-226m16.3 si:ch211-226m16.3 [ Danio rerio (zebrafish) ]

Gene ID: 497177, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch211-226m16.3provided by ZNC
Official Full Name
si:ch211-226m16.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-040724-8
See related
Ensembl:ENSDARG00000026864 AllianceGenome:ZFIN:ZDB-GENE-040724-8
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zC226M16.3
Summary
Orthologous to human TMDD1 (transmembrane and death domain 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See si:ch211-226m16.3 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (33294570..33309622)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene plexin A2 Neighboring gene si:ch211-226m16.2 Neighboring gene uncharacterized LOC137489138 Neighboring gene microRNA 205 Neighboring gene solute carrier family 48 member 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007134.7 Chromosome 23 Reference GRCz11 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
si:ch211-226m16.3 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423520.1 → NP_001410449.1  si:ch211-226m16.3 protein

    Status: PROVISIONAL

    Source sequence(s)
    AL929087
    Related
    ENSDART00000139910.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    33294570..33309622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068216749.1 → XP_068072850.1  si:ch211-226m16.3 protein isoform X1

    Related
    ENSDARP00000033525.4, ENSDART00000030368.5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.