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Rnase11 ribonuclease, RNase A family, 11 (non-active) [ Mus musculus (house mouse) ]

Gene ID: 497113, updated on 17-Aug-2024

Summary

Official Symbol
Rnase11provided by MGI
Official Full Name
ribonuclease, RNase A family, 11 (non-active)provided by MGI
Primary source
MGI:MGI:3528583
See related
Ensembl:ENSMUSG00000059648 AllianceGenome:MGI:3528583
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Raj1
Summary
Predicted to enable nucleic acid binding activity. Predicted to be located in extracellular region. Orthologous to human RNASE11 (ribonuclease A family member 11 (inactive)). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward genital fat pad adult (RPKM 8.1) See more
Orthologs
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Genomic context

See Rnase11 in Genome Data Viewer
Location:
14 C1; 14 26.36 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (51286150..51293159, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (51048693..51055702, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene ribonuclease, RNase A family, 10 (non-active) Neighboring gene STARR-seq mESC enhancer starr_36664 Neighboring gene STARR-positive B cell enhancer mm9_chr14:51646418-51646719 Neighboring gene ribonuclease, RNase A family, 9 (non-active) Neighboring gene STARR-seq mESC enhancer starr_36665 Neighboring gene ribonuclease, RNase A family, 12 (non-active) Neighboring gene predicted gene, 52088

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
NOT enables RNA nuclease activity IKR
Inferred from Key Residues
more info
PubMed 
enables molecular_function ND
No biological Data available
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in defense response to Gram-positive bacterium IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
putative inactive ribonuclease 11
Names
ribonuclease A j1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011877.2NP_001011877.1  putative inactive ribonuclease 11 precursor

    See identical proteins and their annotated locations for NP_001011877.1

    Status: VALIDATED

    Source sequence(s)
    AC136376
    Consensus CDS
    CCDS27031.1
    UniProtKB/Swiss-Prot
    B9EJ01, Q5GAM9
    UniProtKB/TrEMBL
    W0UVF9
    Related
    ENSMUSP00000075472.4, ENSMUST00000076106.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    51286150..51293159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006519222.3XP_006519285.2  putative inactive ribonuclease 11 isoform X1

  2. XM_011245112.2XP_011243414.1  putative inactive ribonuclease 11 isoform X2

    See identical proteins and their annotated locations for XP_011243414.1

    UniProtKB/Swiss-Prot
    B9EJ01, Q5GAM9
    UniProtKB/TrEMBL
    W0UVF9
  3. XM_006519220.2XP_006519283.1  putative inactive ribonuclease 11 isoform X2

    See identical proteins and their annotated locations for XP_006519283.1

    UniProtKB/Swiss-Prot
    B9EJ01, Q5GAM9
    UniProtKB/TrEMBL
    W0UVF9