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icam5 intercellular adhesion molecule 5 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 497001, updated on 4-Nov-2024

Summary

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Official Symbol
icam5provided by Xenbase
Official Full Name
intercellular adhesion molecule 5provided by Xenbase
Primary source
Xenbase:XB-GENE-963198
See related
Ensembl:ENSXETG00000027690 AllianceGenome:Xenbase:XB-GENE-963198
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
tln; tlcn
Summary
Predicted to enable integrin binding activity. Predicted to be involved in cell adhesion. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See icam5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (137542333..137571816)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (126999982..127028667)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene zinc finger GATA like protein 1 Neighboring gene ribonucleoprotein, PTB-binding 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables integrin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables integrin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
intercellular adhesion molecule 5
Names
intercellular adhesion molecule 5, telencephalin
telencephalin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    137542333..137571816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012953003.3 → XP_012808457.1  intercellular adhesion molecule 5

    UniProtKB/TrEMBL
    A0A6I8PWA4, A0A8J0SCE3
    Related
    ENSXETP00000063883.3, ENSXETT00000064989.3
    Conserved Domains (2) summary
    smart00410
    Location:206 → 275
    IG_like; Immunoglobulin like
    cl11960
    Location:278 → 363
    Ig; Immunoglobulin domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001011498.1: Suppressed sequence

    Description
    NM_001011498.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from cow: ICAM5 (GeneID:505158).
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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