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foxj1 forkhead box J1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496834, updated on 17-Aug-2024

Summary

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Official Symbol
foxj1provided by Xenbase
Official Full Name
forkhead box J1provided by Xenbase
Primary source
Xenbase:XB-GENE-853648
See related
Ensembl:ENSXETG00000019549
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
hfh4; hfh-4; fkhl13; xfoxj1; foxj1-a; foxj1-b; foxj1.1; xfoxj1'
Orthologs
human mouse all
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Genomic context

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See foxj1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (45078504..45084365, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (36487035..36492875, complement)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene galanin receptor 2 Neighboring gene exocyst complex component 7 Neighboring gene ring finger protein 157 Neighboring gene uncharacterized LOC116408019

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC89668

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
forkhead box protein J1
Names
forkhead box J1 gene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011367.1 → NP_001011367.1  forkhead box protein J1

    See identical proteins and their annotated locations for NP_001011367.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088533
    UniProtKB/Swiss-Prot
    Q28JA8, Q5M7N6
    Conserved Domains (1) summary
    pfam00250
    Location:112 → 197
    Forkhead; Forkhead domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    45078504..45084365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012971716.2 → XP_012827170.1  forkhead box protein J1 isoform X1

    UniProtKB/Swiss-Prot
    Q28JA8, Q5M7N6
    UniProtKB/TrEMBL
    F7CBH3
    Related
    ENSXETP00000042292.5, ENSXETT00000042292.5
    Conserved Domains (1) summary
    pfam00250
    Location:197 → 283
    Forkhead; Forkhead domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5M7N6.2 GenPept UniProtKB/Swiss-Prot:Q5M7N6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.