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lman2l lectin, mannose-binding 2-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496820, updated on 17-Aug-2024

Summary

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Official Symbol
lman2lprovided by Xenbase
Official Full Name
lectin, mannose-binding 2-likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-999355
See related
Ensembl:ENSXETG00000001248
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See lman2l in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (125216840..125226296, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (109007808..109017334)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 3 Neighboring gene KAT8 regulatory NSL complex subunit 3 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3 Neighboring gene ankyrin repeat domain 39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142900.1 → NP_001136372.1  VIP36-like protein

    See identical proteins and their annotated locations for NP_001136372.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158376
    UniProtKB/TrEMBL
    B0BMC9, F6Q7N3, F7B7C3, Q5M7Q0
    Related
    ENSXETP00000002692.4, ENSXETT00000002692.5
    Conserved Domains (1) summary
    cd06901
    Location:45 → 293
    lectin_VIP36_VIPL; VIP36 and VIPL type 1 transmembrane proteins, lectin domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    125216840..125226296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958943.3 → XP_012814397.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A6I8RN64, Q5M7Q0
    Related
    ENSXETP00000082861.1, ENSXETT00000071387.2
    Conserved Domains (1) summary
    cd06901
    Location:45 → 304
    lectin_VIP36_VIPL; VIP36 and VIPL type 1 transmembrane proteins, lectin domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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