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ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496577, updated on 17-Aug-2024

Summary

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Official Symbol
ndst1provided by Xenbase
Official Full Name
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1provided by Xenbase
Primary source
Xenbase:XB-GENE-955052
See related
Ensembl:ENSXETG00000015804
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See ndst1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (21572143..21626812, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (5995434..6050131)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene neuropeptide Y receptor Y2 like Neighboring gene ribosomal protein S14 Neighboring gene synaptopodin Neighboring gene myozenin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables [heparan sulfate]-glucosamine N-sulfotransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables deacetylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
  
enables heparan sulfate N-deacetylase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within heparin biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
Names
N-deacetylase/N-sulfotransferase 1
NDST-1
glucosaminyl N-deacetylase/N-sulfotransferase 1
NP_001011159.1
XP_012814373.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011159.1 → NP_001011159.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

    See identical proteins and their annotated locations for NP_001011159.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084915
    UniProtKB/Swiss-Prot
    Q5U4X8
    UniProtKB/TrEMBL
    A0A6I8R2S9
    Related
    ENSXETP00000034477.3, ENSXETT00000034477.5
    Conserved Domains (2) summary
    pfam00685
    Location:601 → 851
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:30 → 511
    HSNSD; heparan sulfate-N-deacetylase

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    21572143..21626812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958919.3 → XP_012814373.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8R2S9, F6Z0F4
    Conserved Domains (2) summary
    pfam00685
    Location:601 → 851
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:30 → 511
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5U4X8.1 GenPept UniProtKB/Swiss-Prot:Q5U4X8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.