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cltb clathrin, light chain B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496489, updated on 4-Nov-2024

Summary

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Official Symbol
cltbprovided by Xenbase
Official Full Name
clathrin, light chain Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-954481
See related
Ensembl:ENSXETG00000006744 AllianceGenome:Xenbase:XB-GENE-954481
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable structural molecule activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in clathrin-coated pit and cytoplasmic vesicle membrane. Predicted to be part of clathrin coat of coated pit and clathrin coat of trans-Golgi network vesicle. Predicted to be active in cytosol. Orthologous to human CLTB (clathrin light chain B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See cltb in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (47552014..47571920)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (38056651..38077827)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene ring finger protein 44 Neighboring gene uncharacterized LOC105946815 Neighboring gene Fas associated factor family member 2 Neighboring gene uncharacterized XB5729191 Neighboring gene HIG1 hypoxia inducible domain family member 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
  
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
clathrin light chain B
Names
clathrin, light chain (Lcb)
clathrin, light polypeptide (Lcb)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011078.2 → NP_001011078.1  clathrin light chain B

    See identical proteins and their annotated locations for NP_001011078.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761042
    UniProtKB/TrEMBL
    A0A6I8S0N7, F6WC87, Q5XGH5
    Related
    ENSXETP00000014727.4, ENSXETT00000014727.5
    Conserved Domains (1) summary
    pfam01086
    Location:1 → 202
    Clathrin_lg_ch; Clathrin light chain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    47552014..47571920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958902.3 → XP_012814356.1  clathrin light chain B isoform X1

    UniProtKB/TrEMBL
    A0A6I8S0N7, A0A803JHX4
    Related
    ENSXETP00000107523.1, ENSXETT00000112132.1
    Conserved Domains (1) summary
    pfam01086
    Location:1 → 219
    Clathrin_lg_ch; Clathrin light chain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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