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btg5.2.S B-cell translocation gene 5, gene 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496384, updated on 4-Nov-2024

Summary

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Official Symbol
btg5.2.S
Official Full Name
B-cell translocation gene 5, gene 2 S homeolog
Primary source
Xenbase:XB-GENE-6079010
See related
EnsemblRapid:ENSXLAG00005010764 AllianceGenome:Xenbase:XB-GENE-6079010
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
btg-x; xBtg-x; MGC76328.S
Summary
Predicted to act upstream of or within negative regulation of cell population proliferation and negative regulation of mitotic cell cycle. Predicted to be located in cytoplasm and nucleus. Is expressed in ectoderm. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See btg5.2.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (105200674..105212655, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016712686.1 (305..761)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016729140.1 (90..355)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene protein BTG3-like Neighboring gene BTG family member 3 S homeolog Neighboring gene uncharacterized LOC121396587 Neighboring gene B-cell translocation gene 5, gene 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. xBtg-x regulates Wnt/beta-Catenin signaling during early Xenopus development. Wessely O, et al. Dev Biol, 2005 Jul 1. PMID 15975429, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
B-cell translocation gene 5, gene 2 S homeolog
Names
B-cell translocation protein x
antiproliferative protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095531.1 → NP_001089000.1  B-cell translocation gene 5, gene 2 S homeolog

    See identical proteins and their annotated locations for NP_001089000.1

    Status: PROVISIONAL

    Source sequence(s)
    AY762636
    UniProtKB/TrEMBL
    Q5UC97
    Conserved Domains (1) summary
    pfam07742
    Location:1 → 113
    BTG; BTG family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    105200674..105212655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041570555.1 → XP_041426489.1  B-cell translocation gene 5, gene 2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBY3
    Related
    ENSXLAP00005031804.1, ENSXLAT00005032579.1
    Conserved Domains (1) summary
    cl15439
    Location:40 → 145
    BTG; BTG family

  2. XM_041570556.1 → XP_041426490.1  B-cell translocation gene 5, gene 2 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LCV5
    Conserved Domains (1) summary
    cl15439
    Location:9 → 114
    BTG; BTG family
Nucleotide Protein Strain
Heading Accession and Version

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