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cry4.L cryptochrome 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496373, updated on 4-Nov-2024

Summary

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Official Symbol
cry4.L
Official Full Name
cryptochrome 4 L homeolog
Primary source
Xenbase:XB-GENE-5945179
Locus tag
XELAEV_18011990mg
See related
EnsemblRapid:ENSXLAG00005032541 AllianceGenome:Xenbase:XB-GENE-5945179
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cry1
Summary
Predicted to enable DNA binding activity; FAD binding activity; and deoxyribodipyrimidine photo-lyase activity. Predicted to act upstream of or within circadian regulation of gene expression and entrainment of circadian clock by photoperiod. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cry4.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (54961062..54991947)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (52871101..52902086)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene thyroid stimulating hormone beta L homeolog Neighboring gene zinc finger with KRAB and SCAN domains 8 L homeolog Neighboring gene CD53 molecule L homeolog Neighboring gene uncharacterized XB5809687 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables FAD binding IEA
Inferred from Electronic Annotation
more info
  
enables deoxyribodipyrimidine photo-lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cryptochrome 4 L homeolog; cryptochrome-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    54961062..54991947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018245284.2 → XP_018100773.1  cryptochrome-1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UCH5
    Related
    ENSXLAP00005097697.1, ENSXLAT00005099501.1

  2. XM_018245285.2 → XP_018100774.1  cryptochrome-1 isoform X2

    UniProtKB/TrEMBL
    A0A974HXR2, Q6DFA2
    Related
    ENSXLAP00005097592.1, ENSXLAT00005099384.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001095521.1: Suppressed sequence

    Description
    NM_001095521.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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