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ercc8.S excision repair cross-complementation group 8 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496353, updated on 17-Aug-2024

Summary

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Official Symbol
ercc8.S
Official Full Name
excision repair cross-complementation group 8 S homeolog
Primary source
Xenbase:XB-GENE-1000482
Locus tag
XELAEV_18009224mg
See related
EnsemblRapid:ENSXLAG00005034059
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ercc8
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Genomic context

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Location:
chromosome: 1S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (44481922..44486859, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (44214057..44218836, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor interacting protein 1 S homeolog Neighboring gene transmembrane protein 154-like Neighboring gene F-box and WD repeat domain containing 7 S homeolog Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The cooperative action of CSB, CSA, and UVSSA target TFIIH to DNA damage-stalled RNA polymerase II. van der Weegen Y, et al. Nat Commun, 2020 Apr 30. PMID 32355176, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
excision repair cross-complementation group 8 S homeolog
Names
excision repair cross-complementing rodent repair deficiency, complementation group 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095504.1 → NP_001088973.1  excision repair cross-complementation group 8 S homeolog

    See identical proteins and their annotated locations for NP_001088973.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088955
    UniProtKB/TrEMBL
    A0A974DSA2, Q5HZM7
    Related
    ENSXLAP00005101706.1, ENSXLAT00005103693.1
    Conserved Domains (2) summary
    cd00200
    Location:42 → 362
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:47 → 90
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    44481922..44486859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018239082.2 → XP_018094571.1  excision repair cross-complementation group 8 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0TTL6

  2. XM_041576324.1 → XP_041432258.1  excision repair cross-complementation group 8 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DSA2, Q5HZM7
    Related
    ENSXLAP00005101683.1, ENSXLAT00005103670.1
    Conserved Domains (2) summary
    cd00200
    Location:42 → 362
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:47 → 90
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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