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cib1.L calcium and integrin binding 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496348, updated on 4-Nov-2024

Summary

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Official Symbol
cib1.L
Official Full Name
calcium and integrin binding 1 L homeolog
Primary source
Xenbase:XB-GENE-17334806
Locus tag
XELAEV_18018324mg
See related
EnsemblRapid:ENSXLAG00005023772 AllianceGenome:Xenbase:XB-GENE-17334806
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable calcium ion binding activity and magnesium ion binding activity. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human CIB1 (calcium and integrin binding 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See cib1.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (113974502..113993268)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (98537242..98556117)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 33 homolog B L homeolog Neighboring gene tubulin tyrosine ligase like 13 L homeolog Neighboring gene semaphorin 4B L homeolog Neighboring gene isocitrate dehydrogenase 2 (NADP+), mitochondrial L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130649

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC496348

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095499.1 → NP_001088968.1  uncharacterized protein LOC496348

    See identical proteins and their annotated locations for NP_001088968.1

    Status: PREDICTED

    Source sequence(s)
    BC088946
    UniProtKB/TrEMBL
    A0A974HTK1, Q5HZN6
    Related
    ENSXLAP00005070413.1, ENSXLAT00005071953.1
    Conserved Domains (3) summary
    cd00051
    Location:110 → 177
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:108 → 176
    EF-hand_7; EF-hand domain pair
    pfam13833
    Location:81 → 126
    EF-hand_8; EF-hand domain pair

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    113974502..113993268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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