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pomk.L protein-O-mannose kinase L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496338, updated on 17-Aug-2024

Summary

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Official Symbol
pomk.L
Official Full Name
protein-O-mannose kinase L homeolog
Primary source
Xenbase:XB-GENE-984410
Locus tag
XELAEV_18006148mg
See related
EnsemblRapid:ENSXLAG00005015288
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pomk; sgk196
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Genomic context

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Location:
chromosome: 1L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (104061961..104066527, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (92359980..92364546, complement)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene thymosin beta-10 Neighboring gene farnesyltransferase, CAAX box, subunit alpha L homeolog Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase L homeolog Neighboring gene integrator complex subunit 10 L homeolog Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1 L homeolog Neighboring gene 60S ribosomal protein L27-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables carbohydrate kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphotransferase activity, alcohol group as acceptor ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein O-linked glycosylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein O-mannose kinase
Names
probable inactive protein kinase-like protein SgK196
protein kinase-like protein SgK196
sugen kinase 196
NP_001088958.1
XP_018104678.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095489.1 → NP_001088958.1  protein O-mannose kinase

    See identical proteins and their annotated locations for NP_001088958.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088934
    UniProtKB/Swiss-Prot
    Q5HZP7
    UniProtKB/TrEMBL
    A0A974DYR6
    Related
    ENSXLAP00005044777.1, ENSXLAT00005045876.1
    Conserved Domains (1) summary
    cl21453
    Location:88 → 330
    PKc_like; Protein Kinases, catalytic domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    104061961..104066527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018249189.2 → XP_018104678.1  protein O-mannose kinase isoform X1

    UniProtKB/Swiss-Prot
    Q5HZP7
    UniProtKB/TrEMBL
    A0A974DYR6
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5HZP7.1 GenPept UniProtKB/Swiss-Prot:Q5HZP7

Gene LinkOut

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