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mhc1-uba6.1.L major histocompatibility complex, class 1, UB alpha chain, subfamily 6, member 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496312, updated on 17-Aug-2024

Summary

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Official Symbol
mhc1-uba6.1.L
Official Full Name
major histocompatibility complex, class 1, UB alpha chain, subfamily 6, member 1 L homeolog
Primary source
Xenbase:XB-GENE-5820459
Locus tag
XELAEV_18040566mg
See related
EnsemblRapid:ENSXLAG00005036290
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
mr1; xnc6.1; XB5820455; XB5820455.L; LOC100490553.L; LOC100490553.S; mhc1b-uba6.1 .L (provisional)
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Genomic context

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Location:
chromosome: 8L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (125025778..125038515, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (110197254..110208904, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex, class 1, UB alpha chain, subfamily 9 L homeolog Neighboring gene major histocompatibility complex, class 1, UB alpha chain, subfamily 6, member 2 L homeolog Neighboring gene major histocompatibility complex class I-related gene protein Neighboring gene uncharacterized LOC121397206

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel type of class I gene organization in vertebrates: a large family of non-MHC-linked class I genes is expressed at the RNA level in the amphibian Xenopus. Flajnik MF, et al. EMBO J, 1993 Nov. PMID 8223448, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC496312
Names
major histocompatibility complex class I-related gene protein-like L homeolog
major histocompatibility complex class I-related gene protein-like S homeolog
major histocompatibility complex, class 1b, UB alpha chain, subfamily 6, member 1 L homeolog (provisional)
provisional ortholog of major histocompatibility complex, class I-related L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095467.2 → NP_001088936.1  uncharacterized protein LOC496312 precursor

    See identical proteins and their annotated locations for NP_001088936.1

    Status: PREDICTED

    Source sequence(s)
    BC088832
    UniProtKB/TrEMBL
    A0A974CAW6, Q5HZZ1
    Related
    ENSXLAP00005108552.1, ENSXLAT00005110714.1
    Conserved Domains (2) summary
    cd07698
    Location:201 → 292
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    cl08246
    Location:20 → 192
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    125025778..125038515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572127.1 → XP_041428061.1  uncharacterized protein LOC496312 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LF77, A0A974CAW6
    Conserved Domains (1) summary
    smart00407
    Location:215 → 286
    IGc1; Immunoglobulin C-Type
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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