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eif2b4.L eukaryotic translation initiation factor 2B subunit delta L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496301, updated on 17-Aug-2024

Summary

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Official Symbol
eif2b4.L
Official Full Name
eukaryotic translation initiation factor 2B subunit delta L homeolog
Primary source
Xenbase:XB-GENE-997734
Locus tag
XELAEV_18028434mg
See related
EnsemblRapid:ENSXLAG00005021759
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
eif2b4
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Genomic context

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Location:
chromosome: 5L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (170054719..170064188, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (158676034..158685677, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene uridine-cytidine kinase 1-like 1 L homeolog Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene vomeronasal type-2 receptor 26 Neighboring gene butyrophilin subfamily 3 member A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translational initiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
eukaryotic translation initiation factor 2B subunit delta L homeolog
Names
eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095459.1 → NP_001088928.1  eukaryotic translation initiation factor 2B subunit delta L homeolog

    See identical proteins and their annotated locations for NP_001088928.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122497
    UniProtKB/TrEMBL
    A0A974CZF1, Q0P3R7, Q5I013
    Related
    ENSXLAP00005063876.1, ENSXLAT00005065390.1
    Conserved Domains (2) summary
    COG1184
    Location:249 → 563
    GCD2; Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
    pfam01008
    Location:265 → 555
    IF-2B; Initiation factor 2 subunit family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    170054719..170064188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041562286.1 → XP_041418220.1  eukaryotic translation initiation factor 2B subunit delta L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1KLN6, Q5I013
    Conserved Domains (2) summary
    COG1184
    Location:263 → 577
    GCD2; Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
    cl30717
    Location:56 → 208
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]

  2. XM_041562285.1 → XP_041418219.1  eukaryotic translation initiation factor 2B subunit delta L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KPQ8, Q5I013
    Related
    ENSXLAP00005063830.1, ENSXLAT00005065344.1
    Conserved Domains (2) summary
    COG1184
    Location:266 → 580
    GCD2; Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
    cl30717
    Location:56 → 208
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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