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XB5947952.S hypothetical LOC496300 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 496300, updated on 4-Nov-2024

Summary

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Official Symbol
XB5947952.S
Official Full Name
hypothetical LOC496300 S homeolog
Primary source
Xenbase:XB-GENE-5947955
Locus tag
XELAEV_18009684mg
See related
EnsemblRapid:ENSXLAG00005033176 AllianceGenome:Xenbase:XB-GENE-5947955
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
LOC496300.S; XB5947952.L
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Genomic context

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See XB5947952.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (85195587..85199964, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (80040788..80044173, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene BMP2 inducible kinase S homeolog Neighboring gene progestin and adipoQ receptor family member 3 S homeolog Neighboring gene lamina-associated polypeptide 2-like Neighboring gene ANTXR cell adhesion molecule 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC496300

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095458.1 → NP_001088927.1  uncharacterized protein LOC496300

    See identical proteins and their annotated locations for NP_001088927.1

    Status: PREDICTED

    Source sequence(s)
    BC088809
    UniProtKB/TrEMBL
    Q5I014
    Conserved Domains (1) summary
    pfam08317
    Location:9 → 103
    Spc7; Spc7 kinetochore protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    85195587..85199964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041576311.1 → XP_041432245.1  uncharacterized protein LOC496300 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LU58, A0A974I123
    Related
    ENSXLAP00005099202.1, ENSXLAT00005101073.1
    Conserved Domains (1) summary
    PRK04778
    Location:6 → 88
    PRK04778; septation ring formation regulator EzrA; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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